Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CD1 entry

There are 3 chains in PDB entry 6CD1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 82	VAL 533
B	LEU 83	VAL 533
C	PHE 82	HIS 478

There are189 helices in PDB entry 6CD1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	91	Right-handed alpha
Helix 2	AA2	A	91	108	Right-handed alpha
Helix 3	AA3	A	119	127	Right-handed alpha
Helix 4	AA4	A	128	133	Right-handed 310
Helix 5	AA5	A	147	165	Right-handed alpha
Helix 6	AA6	A	180	193	Right-handed alpha
Helix 7	AA7	A	204	207	Right-handed 310
Helix 8	AA8	A	209	213	Right-handed 310
Helix 9	AA9	A	222	228	Right-handed alpha
Helix 10	AB1	A	243	255	Right-handed alpha
Helix 11	AB2	A	271	282	Right-handed alpha
Helix 12	AB3	A	293	299	Right-handed alpha
Helix 13	AB4	A	304	308	Right-handed 310
Helix 14	AB5	A	339	349	Right-handed alpha
Helix 15	AB6	A	357	371	Right-handed alpha
Helix 16	AB7	A	373	397	Right-handed alpha
Helix 17	AB8	A	403	405	Right-handed 310
Helix 18	AB9	A	421	432	Right-handed alpha
Helix 19	AC1	A	457	464	Right-handed alpha
Helix 20	AC2	A	466	491	Right-handed alpha
Helix 21	AC3	A	495	505	Right-handed alpha
Helix 22	AC4	A	510	526	Right-handed alpha
Helix 23	AC5	B	86	91	Right-handed alpha
Helix 24	AC6	B	91	108	Right-handed alpha
Helix 25	AC7	B	119	127	Right-handed alpha
Helix 26	AC8	B	128	133	Right-handed 310
Helix 27	AC9	B	147	165	Right-handed alpha
Helix 28	AD1	B	180	193	Right-handed alpha
Helix 29	AD2	B	204	207	Right-handed 310
Helix 30	AD3	B	209	213	Right-handed 310
Helix 31	AD4	B	222	228	Right-handed alpha
Helix 32	AD5	B	243	255	Right-handed alpha
Helix 33	AD6	B	271	282	Right-handed alpha
Helix 34	AD7	B	293	299	Right-handed alpha
Helix 35	AD8	B	304	308	Right-handed 310
Helix 36	AD9	B	317	321	Right-handed 310
Helix 37	AE1	B	339	349	Right-handed alpha
Helix 38	AE2	B	357	372	Right-handed alpha
Helix 39	AE3	B	373	397	Right-handed alpha
Helix 40	AE4	B	403	405	Right-handed 310
Helix 41	AE5	B	416	419	Right-handed 310
Helix 42	AE6	B	421	432	Right-handed alpha
Helix 43	AE7	B	457	464	Right-handed alpha
Helix 44	AE8	B	466	490	Right-handed alpha
Helix 45	AE9	B	495	505	Right-handed alpha
Helix 46	AF1	B	510	526	Right-handed alpha
Helix 47	AF2	C	86	91	Right-handed alpha
Helix 48	AF3	C	91	108	Right-handed alpha
Helix 49	AF4	C	119	127	Right-handed alpha
Helix 50	AF5	C	128	133	Right-handed 310
Helix 51	AF6	C	147	165	Right-handed alpha
Helix 52	AF7	C	180	193	Right-handed alpha
Helix 53	AF8	C	204	207	Right-handed 310
Helix 54	AF9	C	209	213	Right-handed 310
Helix 55	AG1	C	222	228	Right-handed alpha
Helix 56	AG2	C	243	255	Right-handed alpha
Helix 57	AG3	C	271	282	Right-handed alpha
Helix 58	AG4	C	293	299	Right-handed alpha
Helix 59	AG5	C	304	308	Right-handed 310
Helix 60	AG6	C	317	321	Right-handed 310
Helix 61	AG7	C	339	349	Right-handed alpha
Helix 62	AG8	C	357	372	Right-handed alpha
Helix 63	AG9	C	373	397	Right-handed alpha
Helix 64	AH1	C	403	405	Right-handed 310
Helix 65	AH2	C	416	419	Right-handed 310
Helix 66	AH3	C	421	432	Right-handed alpha
Helix 67	AH4	C	457	464	Right-handed alpha
Helix 68	AH5	C	466	491	Right-handed alpha
Helix 69	AH6	C	495	505	Right-handed alpha
Helix 70	AH7	C	510	526	Right-handed alpha
Helix 71	AH8	D	86	91	Right-handed alpha
Helix 72	AH9	D	91	108	Right-handed alpha
Helix 73	AI1	D	119	127	Right-handed alpha
Helix 74	AI2	D	128	133	Right-handed 310
Helix 75	AI3	D	147	165	Right-handed alpha
Helix 76	AI4	D	180	193	Right-handed alpha
Helix 77	AI5	D	204	207	Right-handed 310
Helix 78	AI6	D	209	213	Right-handed 310
Helix 79	AI7	D	222	228	Right-handed alpha
Helix 80	AI8	D	243	255	Right-handed alpha
Helix 81	AI9	D	271	282	Right-handed alpha
Helix 82	AJ1	D	293	299	Right-handed alpha
Helix 83	AJ2	D	304	308	Right-handed 310
Helix 84	AJ3	D	317	321	Right-handed 310
Helix 85	AJ4	D	339	349	Right-handed alpha
Helix 86	AJ5	D	357	373	Right-handed alpha
Helix 87	AJ6	D	373	397	Right-handed alpha
Helix 88	AJ7	D	403	405	Right-handed 310
Helix 89	AJ8	D	416	419	Right-handed 310
Helix 90	AJ9	D	421	432	Right-handed alpha
Helix 91	AK1	D	457	464	Right-handed alpha
Helix 92	AK2	D	466	490	Right-handed alpha
Helix 93	AK3	D	497	504	Right-handed alpha
Helix 94	AK4	D	510	526	Right-handed alpha
Helix 95	AK5	E	86	91	Right-handed alpha
Helix 96	AK6	E	91	108	Right-handed alpha
Helix 97	AK7	E	119	127	Right-handed alpha
Helix 98	AK8	E	128	133	Right-handed 310
Helix 99	AK9	E	147	165	Right-handed alpha
Helix 100	AL1	E	180	193	Right-handed alpha
Helix 101	AL2	E	204	207	Right-handed 310
Helix 102	AL3	E	209	213	Right-handed 310
Helix 103	AL4	E	222	228	Right-handed alpha
Helix 104	AL5	E	243	255	Right-handed alpha
Helix 105	AL6	E	271	282	Right-handed alpha
Helix 106	AL7	E	293	299	Right-handed alpha
Helix 107	AL8	E	304	308	Right-handed 310
Helix 108	AL9	E	339	349	Right-handed alpha
Helix 109	AM1	E	357	372	Right-handed alpha
Helix 110	AM2	E	373	397	Right-handed alpha
Helix 111	AM3	E	403	405	Right-handed 310
Helix 112	AM4	E	416	419	Right-handed 310
Helix 113	AM5	E	421	432	Right-handed alpha
Helix 114	AM6	E	457	463	Right-handed alpha
Helix 115	AM7	E	466	491	Right-handed alpha
Helix 116	AM8	E	495	505	Right-handed alpha
Helix 117	AM9	E	510	526	Right-handed alpha
Helix 118	AN1	F	86	91	Right-handed alpha
Helix 119	AN2	F	91	108	Right-handed alpha
Helix 120	AN3	F	119	127	Right-handed alpha
Helix 121	AN4	F	128	133	Right-handed 310
Helix 122	AN5	F	147	165	Right-handed alpha
Helix 123	AN6	F	180	193	Right-handed alpha
Helix 124	AN7	F	204	207	Right-handed 310
Helix 125	AN8	F	209	213	Right-handed 310
Helix 126	AN9	F	222	228	Right-handed alpha
Helix 127	AO1	F	243	255	Right-handed alpha
Helix 128	AO2	F	271	282	Right-handed alpha
Helix 129	AO3	F	293	299	Right-handed alpha
Helix 130	AO4	F	304	308	Right-handed 310
Helix 131	AO5	F	317	321	Right-handed 310
Helix 132	AO6	F	339	349	Right-handed alpha
Helix 133	AO7	F	357	372	Right-handed alpha
Helix 134	AO8	F	373	397	Right-handed alpha
Helix 135	AO9	F	403	405	Right-handed 310
Helix 136	AP1	F	416	419	Right-handed 310
Helix 137	AP2	F	421	432	Right-handed alpha
Helix 138	AP3	F	457	463	Right-handed alpha
Helix 139	AP4	F	466	490	Right-handed alpha
Helix 140	AP5	F	495	504	Right-handed alpha
Helix 141	AP6	F	510	526	Right-handed alpha
Helix 142	AP7	G	86	91	Right-handed alpha
Helix 143	AP8	G	91	108	Right-handed alpha
Helix 144	AP9	G	119	127	Right-handed alpha
Helix 145	AQ1	G	128	133	Right-handed 310
Helix 146	AQ2	G	147	165	Right-handed alpha
Helix 147	AQ3	G	180	193	Right-handed alpha
Helix 148	AQ4	G	204	207	Right-handed 310
Helix 149	AQ5	G	209	213	Right-handed 310
Helix 150	AQ6	G	222	228	Right-handed alpha
Helix 151	AQ7	G	243	255	Right-handed alpha
Helix 152	AQ8	G	271	282	Right-handed alpha
Helix 153	AQ9	G	293	299	Right-handed alpha
Helix 154	AR1	G	304	308	Right-handed 310
Helix 155	AR2	G	317	321	Right-handed 310
Helix 156	AR3	G	339	349	Right-handed alpha
Helix 157	AR4	G	357	372	Right-handed alpha
Helix 158	AR5	G	373	397	Right-handed alpha
Helix 159	AR6	G	403	405	Right-handed 310
Helix 160	AR7	G	416	419	Right-handed 310
Helix 161	AR8	G	421	432	Right-handed alpha
Helix 162	AR9	G	457	463	Right-handed alpha
Helix 163	AS1	G	466	491	Right-handed alpha
Helix 164	AS2	G	495	505	Right-handed alpha
Helix 165	AS3	G	510	526	Right-handed alpha
Helix 166	AS4	H	86	91	Right-handed alpha
Helix 167	AS5	H	91	108	Right-handed alpha
Helix 168	AS6	H	119	127	Right-handed alpha
Helix 169	AS7	H	128	133	Right-handed 310
Helix 170	AS8	H	147	165	Right-handed alpha
Helix 171	AS9	H	180	193	Right-handed alpha
Helix 172	AT1	H	204	207	Right-handed 310
Helix 173	AT2	H	209	213	Right-handed 310
Helix 174	AT3	H	222	228	Right-handed alpha
Helix 175	AT4	H	243	255	Right-handed alpha
Helix 176	AT5	H	271	282	Right-handed alpha
Helix 177	AT6	H	293	299	Right-handed alpha
Helix 178	AT7	H	304	308	Right-handed 310
Helix 179	AT8	H	317	321	Right-handed 310
Helix 180	AT9	H	339	349	Right-handed alpha
Helix 181	AU1	H	357	372	Right-handed alpha
Helix 182	AU2	H	373	397	Right-handed alpha
Helix 183	AU3	H	403	405	Right-handed 310
Helix 184	AU4	H	416	419	Right-handed 310
Helix 185	AU5	H	421	432	Right-handed alpha
Helix 186	AU6	H	457	463	Right-handed alpha
Helix 187	AU7	H	466	490	Right-handed alpha
Helix 188	AU8	H	495	505	Right-handed alpha
Helix 189	AU9	H	510	526	Right-handed alpha

There are 34 sheets in PDB entry 6CD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	434	435	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	141	142	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	311	315	anti-parallel
Strand 4	A	285	289	parallel
Strand 5	A	258	261	parallel
Strand 6	A	198	202	parallel
Strand 7	A	229	233	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	410	414	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	437	439	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	434	435	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	141	142	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	311	315	anti-parallel
Strand 4	B	285	289	parallel
Strand 5	B	258	261	parallel
Strand 6	B	198	202	parallel
Strand 7	B	229	233	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	410	414	anti-parallel
Strand 3	B	452	456	anti-parallel
Strand 4	B	437	439	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	434	435	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	141	142	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	326	331	anti-parallel
Strand 3	C	311	315	anti-parallel
Strand 4	C	285	289	parallel
Strand 5	C	258	261	parallel
Strand 6	C	198	202	parallel
Strand 7	C	229	233	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	410	414	anti-parallel
Strand 3	C	452	456	anti-parallel
Strand 4	C	437	439	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	434	435	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	141	142	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	175	first strand
Strand 2	D	326	331	anti-parallel
Strand 3	D	311	315	anti-parallel
Strand 4	D	285	289	parallel
Strand 5	D	258	261	parallel
Strand 6	D	198	202	parallel
Strand 7	D	229	233	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	410	414	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	437	439	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	434	435	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	175	first strand
Strand 2	E	326	331	anti-parallel
Strand 3	E	311	315	anti-parallel
Strand 4	E	285	289	parallel
Strand 5	E	258	261	parallel
Strand 6	E	198	202	parallel
Strand 7	E	229	233	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	236	first strand
Strand 2	E	241	242	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	401	first strand
Strand 2	E	410	414	anti-parallel
Strand 3	E	452	456	anti-parallel
Strand 4	E	437	439	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	110	first strand
Strand 2	F	434	435	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	141	142	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	175	first strand
Strand 2	F	326	331	anti-parallel
Strand 3	F	311	315	anti-parallel
Strand 4	F	285	289	parallel
Strand 5	F	258	261	parallel
Strand 6	F	198	202	parallel
Strand 7	F	229	233	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	236	first strand
Strand 2	F	241	242	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	401	first strand
Strand 2	F	410	414	anti-parallel
Strand 3	F	452	456	anti-parallel
Strand 4	F	437	439	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	110	first strand
Strand 2	G	434	435	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	138	first strand
Strand 2	G	141	142	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	175	first strand
Strand 2	G	326	331	anti-parallel
Strand 3	G	311	315	anti-parallel
Strand 4	G	285	289	parallel
Strand 5	G	258	261	parallel
Strand 6	G	198	202	parallel
Strand 7	G	229	233	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	236	first strand
Strand 2	G	241	242	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	401	first strand
Strand 2	G	410	414	anti-parallel
Strand 3	G	452	456	anti-parallel
Strand 4	G	437	439	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	110	first strand
Strand 2	H	434	435	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	138	first strand
Strand 2	H	141	142	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	175	first strand
Strand 2	H	326	331	anti-parallel
Strand 3	H	311	315	anti-parallel
Strand 4	H	285	289	parallel
Strand 5	H	258	261	parallel
Strand 6	H	198	202	parallel
Strand 7	H	229	233	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	400	401	first strand
Strand 2	H	410	414	anti-parallel
Strand 3	H	452	456	anti-parallel
Strand 4	H	437	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CD1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD1