Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CD6 entry

There are 4 chains in PDB entry 6CD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 125	LYS 411
B	MET 123	LYS 411
C	GLN 124	LYS 411
D	MET 123	LYS 411

There are 46 helices in PDB entry 6CD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	167	Right-handed alpha
Helix 2	AA2	A	193	206	Right-handed alpha
Helix 3	AA3	A	248	269	Right-handed alpha
Helix 4	AA4	A	277	279	Right-handed 310
Helix 5	AA5	A	313	317	Right-handed 310
Helix 6	AA6	A	318	322	Right-handed 310
Helix 7	AA7	A	331	349	Right-handed alpha
Helix 8	AA8	A	357	368	Right-handed alpha
Helix 9	AA9	A	379	390	Right-handed alpha
Helix 10	AB1	A	399	404	Right-handed alpha
Helix 11	AB2	A	406	411	Right-handed alpha
Helix 12	AB3	B	161	166	Right-handed alpha
Helix 13	AB4	B	191	206	Right-handed alpha
Helix 14	AB5	B	248	269	Right-handed alpha
Helix 15	AB6	B	277	279	Right-handed 310
Helix 16	AB7	B	313	317	Right-handed 310
Helix 17	AB8	B	318	322	Right-handed 310
Helix 18	AB9	B	331	349	Right-handed alpha
Helix 19	AC1	B	357	368	Right-handed alpha
Helix 20	AC2	B	379	390	Right-handed alpha
Helix 21	AC3	B	399	404	Right-handed alpha
Helix 22	AC4	B	406	411	Right-handed alpha
Helix 23	AC5	C	124	128	Right-handed 310
Helix 24	AC6	C	161	165	Right-handed alpha
Helix 25	AC7	C	191	205	Right-handed alpha
Helix 26	AC8	C	248	269	Right-handed alpha
Helix 27	AC9	C	277	279	Right-handed 310
Helix 28	AD1	C	313	317	Right-handed 310
Helix 29	AD2	C	318	323	Right-handed alpha
Helix 30	AD3	C	331	349	Right-handed alpha
Helix 31	AD4	C	357	368	Right-handed alpha
Helix 32	AD5	C	379	390	Right-handed alpha
Helix 33	AD6	C	399	404	Right-handed alpha
Helix 34	AD7	C	406	411	Right-handed alpha
Helix 35	AD8	D	149	151	Right-handed 310
Helix 36	AD9	D	161	165	Right-handed alpha
Helix 37	AE1	D	191	205	Right-handed alpha
Helix 38	AE2	D	248	269	Right-handed alpha
Helix 39	AE3	D	277	279	Right-handed 310
Helix 40	AE4	D	313	317	Right-handed 310
Helix 41	AE5	D	318	323	Right-handed alpha
Helix 42	AE6	D	331	349	Right-handed alpha
Helix 43	AE7	D	357	368	Right-handed alpha
Helix 44	AE8	D	379	390	Right-handed alpha
Helix 45	AE9	D	399	404	Right-handed alpha
Helix 46	AF1	D	406	411	Right-handed alpha

There are 16 sheets in PDB entry 6CD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	135	first strand
Strand 2	A	141	147	anti-parallel
Strand 3	A	152	160	anti-parallel
Strand 4	A	225	231	anti-parallel
Strand 5	A	214	218	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	298	299	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	283	first strand
Strand 2	A	289	291	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	329	330	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	128	135	anti-parallel
Strand 3	B	141	147	anti-parallel
Strand 4	B	152	160	anti-parallel
Strand 5	B	225	231	anti-parallel
Strand 6	B	214	218	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	298	299	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	289	291	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	329	330	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	141	147	anti-parallel
Strand 3	C	152	160	anti-parallel
Strand 4	C	225	231	anti-parallel
Strand 5	C	214	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	298	299	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	289	291	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	329	330	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	128	135	anti-parallel
Strand 3	D	141	147	anti-parallel
Strand 4	D	152	160	anti-parallel
Strand 5	D	225	231	anti-parallel
Strand 6	D	214	219	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	298	299	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	283	first strand
Strand 2	D	289	291	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	329	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD6