Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CD7 entry

There are 2 chains in PDB entry 6CD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 298
B
 GLY 0SER 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6CD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
50 68Right-handed alpha
Helix 3
AA3
A
104 111Right-handed alpha
Helix 4
AA4
A
112 132Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
145 162Right-handed alpha
Helix 7
AA7
A
166 182Right-handed alpha
Helix 8
AA8
A
183 187Right-handed 310
Helix 9
AA9
A
199 201Right-handed 310
Helix 10
AB1
A
227 232Right-handed alpha
Helix 11
AB2
A
241 253Right-handed alpha
Helix 12
AB3
A
256 283Right-handed alpha
Helix 13
AB4
A
284 298Right-handed alpha
Helix 14
AB5
B
5 17Right-handed alpha
Helix 15
AB6
B
50 67Right-handed alpha
Helix 16
AB7
B
104 111Right-handed alpha
Helix 17
AB8
B
112 133Right-handed alpha
Helix 18
AB9
B
139 143Right-handed 310
Helix 19
AC1
B
145 162Right-handed alpha
Helix 20
AC2
B
166 182Right-handed alpha
Helix 21
AC3
B
183 187Right-handed 310
Helix 22
AC4
B
199 201Right-handed 310
Helix 23
AC5
B
227 232Right-handed alpha
Helix 24
AC6
B
241 253Right-handed alpha
Helix 25
AC7
B
256 282Right-handed alpha
Helix 26
AC8
B
285 297Right-handed alpha
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There are 6 sheets in PDB entry 6CD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
93 96anti-parallel
Strand 5
A
78 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
211 215anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
222 224anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 30first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
43 48anti-parallel
Strand 4
B
93 96anti-parallel
Strand 5
B
78 81anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
203 206anti-parallel
Strand 3
B
211 215anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
222 224anti-parallel
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