Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CD8 entry

There are 4 chains in PDB entry 6CD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 123VAL 289
B
 GLY 125VAL 289
C
 PRO 1VAL 4
D
 PRO 1VAL 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6CD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 152Right-handed 310
Helix 2
AA2
A
194 203Right-handed alpha
Helix 3
AA3
A
204 212Right-handed 310
Helix 4
AA4
A
221 226Right-handed 310
Helix 5
AA5
B
194 203Right-handed alpha
Helix 6
AA6
B
204 212Right-handed 310
Helix 7
AA7
B
221 228Right-handed alpha
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There are 4 sheets in PDB entry 6CD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 133first strand
Strand 2
A
138 149anti-parallel
Strand 3
A
154 162anti-parallel
Strand 4
A
170 179anti-parallel
Strand 5
A
230 240anti-parallel
Strand 6
A
257 263anti-parallel
Strand 7
A
268 274anti-parallel
Strand 8
A
283 288anti-parallel
Strand 9
A
127 133anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
C
2 3anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 133first strand
Strand 2
B
138 149anti-parallel
Strand 3
B
154 162anti-parallel
Strand 4
B
170 179anti-parallel
Strand 5
B
230 240anti-parallel
Strand 6
B
257 263anti-parallel
Strand 7
B
268 274anti-parallel
Strand 8
B
283 288anti-parallel
Strand 9
B
127 133anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
D
2 3anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il