Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CDD entry

There are 2 chains in PDB entry 6CDD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	THR 596
B	PRO 132	VAL 303

There are 30 helices in PDB entry 6CDD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	136	Right-handed alpha
Helix 2	AA2	A	139	147	Right-handed alpha
Helix 3	AA3	A	178	185	Right-handed alpha
Helix 4	AA4	A	192	200	Right-handed alpha
Helix 5	AA5	A	205	209	Right-handed 310
Helix 6	AA6	A	233	237	Right-handed 310
Helix 7	AA7	A	264	277	Right-handed alpha
Helix 8	AA8	A	326	337	Right-handed alpha
Helix 9	AA9	A	371	384	Right-handed alpha
Helix 10	AB1	A	422	431	Right-handed alpha
Helix 11	AB2	A	515	519	Right-handed 310
Helix 12	AB3	A	523	531	Right-handed alpha
Helix 13	AB4	A	544	555	Right-handed alpha
Helix 14	AB5	A	558	572	Right-handed alpha
Helix 15	AB6	A	573	582	Right-handed alpha
Helix 16	AB7	A	583	595	Right-handed alpha
Helix 17	AB8	B	139	147	Right-handed alpha
Helix 18	AB9	B	178	185	Right-handed alpha
Helix 19	AC1	B	192	200	Right-handed alpha
Helix 20	AC2	B	205	209	Right-handed 310
Helix 21	AC3	B	264	277	Right-handed alpha
Helix 22	AC4	B	326	337	Right-handed alpha
Helix 23	AC5	B	371	384	Right-handed alpha
Helix 24	AC6	B	422	431	Right-handed alpha
Helix 25	AC7	B	515	519	Right-handed 310
Helix 26	AC8	B	523	531	Right-handed alpha
Helix 27	AC9	B	544	555	Right-handed alpha
Helix 28	AD1	B	558	572	Right-handed alpha
Helix 29	AD2	B	573	582	Right-handed alpha
Helix 30	AD3	B	583	595	Right-handed alpha

There are 11 sheets in PDB entry 6CDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	254	255	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	464	469	parallel
Strand 3	A	475	479	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	299	308	parallel
Strand 3	A	283	293	anti-parallel
Strand 4	A	340	348	anti-parallel
Strand 5	A	402	408	parallel
Strand 6	A	414	421	anti-parallel
Strand 7	A	490	496	anti-parallel
Strand 8	A	259	262	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	318	321	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	396	399	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	442	445	anti-parallel
Strand 3	A	483	485	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	254	255	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	464	469	parallel
Strand 3	B	475	479	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	299	308	parallel
Strand 3	B	283	293	anti-parallel
Strand 4	B	340	348	anti-parallel
Strand 5	B	402	408	parallel
Strand 6	B	414	421	anti-parallel
Strand 7	B	490	496	anti-parallel
Strand 8	B	259	262	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	318	321	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	442	445	anti-parallel
Strand 3	B	483	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CDD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDD