Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CDF entry

There is 1 chain in PDB entry 6CDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25THR 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6CDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
63 70Right-handed alpha
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
A
106 113Right-handed alpha
Helix 6
AA6
A
124 142Right-handed alpha
Helix 7
AA7
A
142 152Right-handed alpha
Helix 8
AA8
A
158 166Right-handed alpha
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
210 215Right-handed alpha
Helix 11
AB2
A
222 230Right-handed alpha
Helix 12
AB3
A
248 253Right-handed alpha
Helix 13
AB4
A
266 270Right-handed 310
Helix 14
AB5
A
271 281Right-handed alpha
Helix 15
AB6
A
320 341Right-handed alpha
Helix 16
AB7
A
352 356Right-handed 310
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There are 2 sheets in PDB entry 6CDF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
29 32parallel
Strand 3
A
72 75parallel
Strand 4
A
94 97parallel
Strand 5
A
116 118parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
199 203parallel
Strand 3
A
176 180parallel
Strand 4
A
232 235parallel
Strand 5
A
259 263parallel
Strand 6
A
284 289parallel
Strand 7
A
310 312parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il