Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CDS entry

There are 2 chains in PDB entry 6CDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15LEU 339
B
 LYS 15LEU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6CDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 55Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
111 128Right-handed alpha
Helix 6
AA6
A
134 151Right-handed alpha
Helix 7
AA7
A
170 178Right-handed alpha
Helix 8
AA8
A
180 194Right-handed alpha
Helix 9
AA9
A
199 212Right-handed alpha
Helix 10
AB1
A
289 338Right-handed alpha
Helix 11
AB2
B
42 55Right-handed alpha
Helix 12
AB3
B
58 60Right-handed 310
Helix 13
AB4
B
80 84Right-handed 310
Helix 14
AB5
B
104 109Right-handed alpha
Helix 15
AB6
B
111 128Right-handed alpha
Helix 16
AB7
B
134 151Right-handed alpha
Helix 17
AB8
B
170 175Right-handed alpha
Helix 18
AB9
B
182 194Right-handed alpha
Helix 19
AC1
B
199 212Right-handed alpha
Helix 20
AC2
B
289 338Right-handed alpha
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There are 4 sheets in PDB entry 6CDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
92 98parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
71 74anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
283 286anti-parallel
Strand 6
A
270 275anti-parallel
Strand 7
A
261 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
21 27anti-parallel
Strand 3
B
92 98parallel
Strand 4
B
62 68anti-parallel
Strand 5
B
71 74anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
231 237anti-parallel
Strand 4
B
220 226anti-parallel
Strand 5
B
283 286anti-parallel
Strand 6
B
270 275anti-parallel
Strand 7
B
261 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il