Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CDU entry

There are 4 chains in PDB entry 6CDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	LEU 416
B	ARG 10	LEU 416
C	ARG 10	LEU 416
D	ARG 10	LYS 312

There are 85 helices in PDB entry 6CDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	69	Right-handed alpha
Helix 2	AA2	A	149	154	Right-handed alpha
Helix 3	AA3	A	176	179	Right-handed 310
Helix 4	AA4	A	223	230	Right-handed alpha
Helix 5	AA5	A	230	243	Right-handed alpha
Helix 6	AA6	A	251	273	Right-handed alpha
Helix 7	AA7	A	284	310	Right-handed alpha
Helix 8	AA8	A	390	414	Right-handed alpha
Helix 9	AA9	B	61	69	Right-handed alpha
Helix 10	AB1	B	176	179	Right-handed 310
Helix 11	AB2	B	223	230	Right-handed alpha
Helix 12	AB3	B	230	243	Right-handed alpha
Helix 13	AB4	B	244	247	Right-handed 310
Helix 14	AB5	B	251	273	Right-handed alpha
Helix 15	AB6	B	284	310	Right-handed alpha
Helix 16	AB7	B	390	414	Right-handed alpha
Helix 17	AB8	C	61	69	Right-handed alpha
Helix 18	AB9	C	149	153	Right-handed 310
Helix 19	AC1	C	176	179	Right-handed 310
Helix 20	AC2	C	223	230	Right-handed alpha
Helix 21	AC3	C	230	243	Right-handed alpha
Helix 22	AC4	C	244	247	Right-handed 310
Helix 23	AC5	C	251	273	Right-handed alpha
Helix 24	AC6	C	284	310	Right-handed alpha
Helix 25	AC7	C	390	414	Right-handed alpha
Helix 26	AC8	D	61	69	Right-handed alpha
Helix 27	AC9	D	149	154	Right-handed alpha
Helix 28	AD1	D	176	179	Right-handed 310
Helix 29	AD2	D	223	230	Right-handed alpha
Helix 30	AD3	D	230	243	Right-handed alpha
Helix 31	AD4	D	244	247	Right-handed 310
Helix 32	AD5	D	251	273	Right-handed alpha
Helix 33	AD6	D	284	310	Right-handed alpha
Helix 34	AD7	D	390	414	Right-handed alpha
Helix 35	AD8	E	62	69	Right-handed alpha
Helix 36	AD9	E	149	154	Right-handed alpha
Helix 37	AE1	E	176	179	Right-handed 310
Helix 38	AE2	E	223	230	Right-handed alpha
Helix 39	AE3	E	230	243	Right-handed alpha
Helix 40	AE4	E	251	273	Right-handed alpha
Helix 41	AE5	E	284	310	Right-handed alpha
Helix 42	AE6	E	390	414	Right-handed alpha
Helix 43	AE7	F	62	69	Right-handed alpha
Helix 44	AE8	F	149	154	Right-handed alpha
Helix 45	AE9	F	176	179	Right-handed 310
Helix 46	AF1	F	223	230	Right-handed alpha
Helix 47	AF2	F	230	243	Right-handed alpha
Helix 48	AF3	F	244	247	Right-handed 310
Helix 49	AF4	F	251	273	Right-handed alpha
Helix 50	AF5	F	284	308	Right-handed alpha
Helix 51	AF6	F	390	414	Right-handed alpha
Helix 52	AF7	G	61	69	Right-handed alpha
Helix 53	AF8	G	149	154	Right-handed alpha
Helix 54	AF9	G	176	179	Right-handed 310
Helix 55	AG1	G	223	230	Right-handed alpha
Helix 56	AG2	G	230	242	Right-handed alpha
Helix 57	AG3	G	243	245	Right-handed 310
Helix 58	AG4	G	251	273	Right-handed alpha
Helix 59	AG5	G	284	310	Right-handed alpha
Helix 60	AG6	G	390	414	Right-handed alpha
Helix 61	AG7	H	62	69	Right-handed alpha
Helix 62	AG8	H	149	154	Right-handed alpha
Helix 63	AG9	H	176	179	Right-handed 310
Helix 64	AH1	H	223	230	Right-handed alpha
Helix 65	AH2	H	230	243	Right-handed alpha
Helix 66	AH3	H	251	273	Right-handed alpha
Helix 67	AH4	H	284	310	Right-handed alpha
Helix 68	AH5	H	390	414	Right-handed alpha
Helix 69	AH6	I	62	69	Right-handed alpha
Helix 70	AH7	I	149	154	Right-handed alpha
Helix 71	AH8	I	176	179	Right-handed 310
Helix 72	AH9	I	223	230	Right-handed alpha
Helix 73	AI1	I	230	242	Right-handed alpha
Helix 74	AI2	I	243	247	Right-handed 310
Helix 75	AI3	I	251	273	Right-handed alpha
Helix 76	AI4	I	284	310	Right-handed alpha
Helix 77	AI5	I	390	414	Right-handed alpha
Helix 78	AI6	J	62	69	Right-handed alpha
Helix 79	AI7	J	176	179	Right-handed 310
Helix 80	AI8	J	223	230	Right-handed alpha
Helix 81	AI9	J	230	242	Right-handed alpha
Helix 82	AJ1	J	243	245	Right-handed 310
Helix 83	AJ2	J	251	273	Right-handed alpha
Helix 84	AJ3	J	284	310	Right-handed alpha
Helix 85	AJ4	J	391	414	Right-handed alpha

There are 22 sheets in PDB entry 6CDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	147	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	174	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	147	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	174	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	147	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel
Strand 5	H	167	174	parallel
Strand 6	H	187	199	anti-parallel
Strand 7	H	123	132	anti-parallel
Strand 8	H	76	78	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	187	199	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	H	167	174	parallel
Strand 5	H	187	199	anti-parallel
Strand 6	H	160	162	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	147	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	147	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	174	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	100	111	anti-parallel
Strand 4	F	32	43	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	140	147	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	167	174	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	32	44	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	140	147	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	174	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	32	43	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	140	147	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	58	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	140	147	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	78	first strand
Strand 2	I	123	132	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	160	174	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	58	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	32	44	anti-parallel
Strand 5	J	12	27	anti-parallel
Strand 6	J	140	147	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	167	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDU