Analysis of interatomic Contacts of Structural Units in PDB entry:
6CDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CDW entry

There is 1 chain in PDB entry 6CDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 17ASN 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6CDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
59 65Right-handed alpha
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
A
73 85Right-handed alpha
Helix 7
AA7
A
99 110Right-handed alpha
Helix 8
AA8
A
129 132Right-handed 310
Helix 9
AA9
A
133 144Right-handed alpha
Helix 10
AB1
A
158 172Right-handed alpha
Helix 11
AB2
A
189 201Right-handed alpha
Helix 12
AB3
A
201 210Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6CDW.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
91 95parallel
Strand 3
A
21 25parallel
Strand 4
A
152 155parallel
Strand 5
A
178 181parallel
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