Analysis of interatomic Contacts of Structural Units in PDB entry:
6CE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CE7 entry

There are 5 chains in PDB entry 6CE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	HIS 1	GLU 808
A	CYS 8	ASP 591
N	GLY 1	ASN 21
O	PHE 1	ALA 30
P	GLN 691	ARG 720

There are 22 helices in PDB entry 6CE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	24	Right-handed 310
Helix 2	AA2	B	43	48	Right-handed alpha
Helix 3	AA3	B	71	76	Right-handed alpha
Helix 4	AA4	B	132	136	Right-handed 310
Helix 5	AA5	B	255	265	Right-handed alpha
Helix 6	AA6	B	314	318	Right-handed 310
Helix 7	AA7	B	327	331	Right-handed 310
Helix 8	AA8	B	352	359	Right-handed alpha
Helix 9	AA9	B	435	446	Right-handed alpha
Helix 10	AB1	B	458	462	Right-handed 310
Helix 11	AB2	B	496	500	Right-handed 310
Helix 12	AB3	A	17	23	Right-handed 310
Helix 13	AB4	A	43	48	Right-handed alpha
Helix 14	AB5	A	255	265	Right-handed alpha
Helix 15	AB6	A	323	328	Right-handed alpha
Helix 16	AB7	A	350	357	Right-handed alpha
Helix 17	AB8	A	435	446	Right-handed alpha
Helix 18	AB9	A	447	451	Right-handed 310
Helix 19	AC1	N	2	6	Right-handed alpha
Helix 20	AC2	N	12	19	Right-handed alpha
Helix 21	AC3	O	8	19	Right-handed alpha
Helix 22	AC4	P	692	715	Right-handed alpha

There are 28 sheets in PDB entry 6CE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	13	first strand
Strand 2	B	26	38	parallel
Strand 3	B	56	57	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	13	first strand
Strand 2	B	26	38	parallel
Strand 3	B	61	66	parallel
Strand 4	B	93	96	parallel
Strand 5	B	117	120	parallel
Strand 6	B	144	146	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	111	112	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	179	180	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	225	228	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	252	254	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	341	342	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	363	364	parallel
Strand 3	B	387	388	parallel
Strand 4	B	420	421	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	398	403	parallel
Strand 3	B	425	429	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	581	583	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	480	first strand
Strand 2	B	485	488	anti-parallel
Strand 3	B	550	552	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	534	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	568	569	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	534	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	562	565	anti-parallel
Strand 4	B	586	587	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	604	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	767	770	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	762	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	778	786	anti-parallel
Strand 4	B	799	804	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	33	36	parallel
Strand 3	A	61	64	parallel
Strand 4	A	91	96	parallel
Strand 5	A	116	120	parallel
Strand 6	A	144	145	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	56	57	parallel
Strand 3	A	81	82	parallel
Strand 4	A	111	112	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	284	285	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	302	303	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	321	first strand
Strand 2	A	335	342	parallel
Strand 3	A	363	364	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	321	first strand
Strand 2	A	335	342	parallel
Strand 3	A	368	371	parallel
Strand 4	A	398	403	parallel
Strand 5	A	425	429	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	420	421	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	581	582	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	480	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	A	550	553	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	534	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	568	570	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	534	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	561	565	anti-parallel
Strand 4	A	586	589	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CE7