Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CFI entry

There are 5 chains in PDB entry 6CFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 129ILE 632
X
 GLY 256ALA 308
W
 T 1 A 24
Y
 A 1 C 8
Y
 T 10 A 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6CFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
133 163Right-handed alpha
Helix 2
AA2
A
164 173Right-handed alpha
Helix 3
AA3
A
176 184Right-handed alpha
Helix 4
AA4
A
191 215Right-handed alpha
Helix 5
AA5
A
229 239Right-handed alpha
Helix 6
AA6
A
247 258Right-handed alpha
Helix 7
AA7
A
261 276Right-handed alpha
Helix 8
AA8
A
304 310Right-handed alpha
Helix 9
AA9
A
353 357Right-handed 310
Helix 10
AB1
A
375 380Right-handed alpha
Helix 11
AB2
A
386 394Right-handed 310
Helix 12
AB3
A
395 410Right-handed alpha
Helix 13
AB4
A
415 433Right-handed alpha
Helix 14
AB5
A
438 442Right-handed 310
Helix 15
AB6
A
451 453Right-handed 310
Helix 16
AB7
A
492 499Right-handed alpha
Helix 17
AB8
A
533 535Right-handed 310
Helix 18
AB9
A
563 567Right-handed 310
Helix 19
AC1
A
578 587Right-handed alpha
Helix 20
AC2
A
618 628Right-handed alpha
Helix 21
AC3
A
629 632Right-handed 310
Helix 22
AC4
X
258 272Right-handed alpha
Helix 23
AC5
X
275 287Right-handed alpha
Helix 24
AC6
X
289 297Right-handed alpha
Helix 25
AC7
X
297 307Right-handed alpha
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There are 8 sheets in PDB entry 6CFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
259 260parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
326 331anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
280 286anti-parallel
Strand 5
A
362 366anti-parallel
Strand 6
A
372 374anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
467 470anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
487 489anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
537 539anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
529 531anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
591 594parallel
Strand 3
A
609 615anti-parallel
Strand 4
A
571 575anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
605 606anti-parallel
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