Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CFN entry

There are 8 chains in PDB entry 6CFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 419LYS 498
B
 LYS 419LEU 488
C
 LEU 420ILE 500
D
 LEU 420ASN 487
E
 LYS 419ILE 497
F
 PRO 418LYS 495
G
 PRO 418ASN 487
H
 LYS 419ASN 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6CFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 452Right-handed alpha
Helix 2
AA2
A
469 472Right-handed 310
Helix 3
AA3
A
473 485Right-handed alpha
Helix 4
AA4
A
487 498Right-handed alpha
Helix 5
AA5
B
438 450Right-handed alpha
Helix 6
AA6
B
473 484Right-handed alpha
Helix 7
AA7
C
438 452Right-handed alpha
Helix 8
AA8
C
473 485Right-handed alpha
Helix 9
AA9
C
487 498Right-handed alpha
Helix 10
AB1
D
438 451Right-handed alpha
Helix 11
AB2
D
469 472Right-handed 310
Helix 12
AB3
D
473 484Right-handed alpha
Helix 13
AB4
E
438 450Right-handed alpha
Helix 14
AB5
E
468 472Right-handed 310
Helix 15
AB6
E
473 484Right-handed alpha
Helix 16
AB7
E
488 497Right-handed alpha
Helix 17
AB8
F
438 450Right-handed alpha
Helix 18
AB9
F
473 485Right-handed alpha
Helix 19
AC1
F
488 495Right-handed alpha
Helix 20
AC2
G
438 451Right-handed alpha
Helix 21
AC3
G
469 472Right-handed 310
Helix 22
AC4
G
473 484Right-handed alpha
Helix 23
AC5
H
438 452Right-handed alpha
Helix 24
AC6
H
469 472Right-handed 310
Helix 25
AC7
H
473 485Right-handed alpha
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There are 8 sheets in PDB entry 6CFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
435 437anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
435 437anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 432first strand
Strand 2
C
435 437anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
430 432first strand
Strand 2
D
435 437anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
430 432first strand
Strand 2
E
435 437anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
430 432first strand
Strand 2
F
435 437anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
430 432first strand
Strand 2
G
435 437anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
430 432first strand
Strand 2
H
435 437anti-parallel
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