Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CFO entry

There are 4 chains in PDB entry 6CFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	SER 361
B	SER 0	ILE 329
C	SER 0	SER 361
D	SER 0	MET 238

There are 62 helices in PDB entry 6CFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	55	Right-handed alpha
Helix 2	AA2	A	68	78	Right-handed alpha
Helix 3	AA3	A	91	98	Right-handed alpha
Helix 4	AA4	A	101	110	Right-handed alpha
Helix 5	AA5	A	140	156	Right-handed alpha
Helix 6	AA6	A	168	171	Right-handed 310
Helix 7	AA7	A	172	185	Right-handed alpha
Helix 8	AA8	A	204	208	Right-handed alpha
Helix 9	AA9	A	212	216	Right-handed 310
Helix 10	AB1	A	229	246	Right-handed alpha
Helix 11	AB2	A	274	286	Right-handed alpha
Helix 12	AB3	A	286	298	Right-handed alpha
Helix 13	AB4	A	302	327	Right-handed alpha
Helix 14	AB5	A	331	335	Right-handed 310
Helix 15	AB6	B	5	20	Right-handed alpha
Helix 16	AB7	B	42	48	Right-handed alpha
Helix 17	AB8	B	58	72	Right-handed alpha
Helix 18	AB9	B	82	88	Right-handed 310
Helix 19	AC1	B	89	95	Right-handed alpha
Helix 20	AC2	B	99	104	Right-handed alpha
Helix 21	AC3	B	125	129	Right-handed 310
Helix 22	AC4	B	132	138	Right-handed alpha
Helix 23	AC5	B	149	163	Right-handed alpha
Helix 24	AC6	B	172	176	Right-handed 310
Helix 25	AC7	B	183	188	Right-handed alpha
Helix 26	AC8	B	214	228	Right-handed alpha
Helix 27	AC9	B	245	257	Right-handed alpha
Helix 28	AD1	B	270	282	Right-handed alpha
Helix 29	AD2	B	284	288	Right-handed 310
Helix 30	AD3	B	305	311	Right-handed alpha
Helix 31	AD4	B	315	327	Right-handed alpha
Helix 32	AD5	C	29	55	Right-handed alpha
Helix 33	AD6	C	68	78	Right-handed alpha
Helix 34	AD7	C	91	98	Right-handed alpha
Helix 35	AD8	C	101	110	Right-handed alpha
Helix 36	AD9	C	140	156	Right-handed alpha
Helix 37	AE1	C	168	171	Right-handed 310
Helix 38	AE2	C	172	185	Right-handed alpha
Helix 39	AE3	C	204	208	Right-handed alpha
Helix 40	AE4	C	212	216	Right-handed 310
Helix 41	AE5	C	229	246	Right-handed alpha
Helix 42	AE6	C	274	286	Right-handed alpha
Helix 43	AE7	C	286	298	Right-handed alpha
Helix 44	AE8	C	302	327	Right-handed alpha
Helix 45	AE9	C	331	335	Right-handed 310
Helix 46	AF1	D	5	20	Right-handed alpha
Helix 47	AF2	D	42	48	Right-handed alpha
Helix 48	AF3	D	58	72	Right-handed alpha
Helix 49	AF4	D	82	88	Right-handed 310
Helix 50	AF5	D	89	95	Right-handed alpha
Helix 51	AF6	D	99	104	Right-handed alpha
Helix 52	AF7	D	125	129	Right-handed 310
Helix 53	AF8	D	132	138	Right-handed alpha
Helix 54	AF9	D	149	163	Right-handed alpha
Helix 55	AG1	D	172	176	Right-handed 310
Helix 56	AG2	D	183	188	Right-handed alpha
Helix 57	AG3	D	214	228	Right-handed alpha
Helix 58	AG4	D	245	257	Right-handed alpha
Helix 59	AG5	D	270	282	Right-handed alpha
Helix 60	AG6	D	284	288	Right-handed 310
Helix 61	AG7	D	305	311	Right-handed alpha
Helix 62	AG8	D	315	328	Right-handed alpha

There are 14 sheets in PDB entry 6CFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	24	28	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	251	256	parallel
Strand 4	A	189	195	parallel
Strand 5	A	161	166	parallel
Strand 6	A	84	86	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	356	359	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	179	181	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	23	27	parallel
Strand 3	B	75	79	parallel
Strand 4	B	113	117	parallel
Strand 5	B	167	171	parallel
Strand 6	B	143	145	parallel
Strand 7	B	240	242	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	207	211	parallel
Strand 4	B	259	262	parallel
Strand 5	B	293	295	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	24	28	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	222	226	anti-parallel
Strand 3	C	251	256	parallel
Strand 4	C	189	195	parallel
Strand 5	C	161	166	parallel
Strand 6	C	84	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	202	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	349	first strand
Strand 2	C	356	359	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	4	first strand
Strand 2	D	179	182	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	23	27	parallel
Strand 3	D	75	79	parallel
Strand 4	D	113	117	parallel
Strand 5	D	167	171	parallel
Strand 6	D	143	145	parallel
Strand 7	D	240	242	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	233	237	anti-parallel
Strand 3	D	207	211	parallel
Strand 4	D	259	262	parallel
Strand 5	D	293	295	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFO