Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CFW entry

There are 14 chains in PDB entry 6CFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	TRP 3	MET 507
G	ILE 2	ARG 114
D	LEU 14	TRP 91
I	MET 1	ARG 114
M	ILE 3	VAL 319
F	ASP 4	SER 148
A	SER 2	GLY 166
E	MET 1	TRP 93
C	ALA 3	LYS 116
B	ILE 2	LEU 83
J	ARG 13	LYS 155
K	ALA 4	ARG 169
L	TRP 7	ARG 380
N	ILE 2	LYS 122

There are107 helices in PDB entry 6CFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	8	16	Right-handed alpha
Helix 2	AA2	H	21	25	Right-handed 310
Helix 3	AA3	H	27	54	Right-handed alpha
Helix 4	AA4	H	83	100	Right-handed alpha
Helix 5	AA5	H	113	123	Right-handed alpha
Helix 6	AA6	H	126	132	Right-handed alpha
Helix 7	AA7	H	136	154	Right-handed alpha
Helix 8	AA8	H	161	192	Right-handed alpha
Helix 9	AA9	H	198	206	Right-handed alpha
Helix 10	AB1	H	209	223	Right-handed alpha
Helix 11	AB2	H	228	231	Right-handed 310
Helix 12	AB3	H	232	239	Right-handed alpha
Helix 13	AB4	H	243	248	Right-handed alpha
Helix 14	AB5	H	260	269	Right-handed alpha
Helix 15	AB6	H	276	298	Right-handed alpha
Helix 16	AB7	H	305	313	Right-handed alpha
Helix 17	AB8	H	316	330	Right-handed alpha
Helix 18	AB9	H	344	368	Right-handed alpha
Helix 19	AC1	H	378	382	Right-handed 310
Helix 20	AC2	H	383	399	Right-handed alpha
Helix 21	AC3	H	406	420	Right-handed alpha
Helix 22	AC4	H	420	444	Right-handed alpha
Helix 23	AC5	H	464	480	Right-handed alpha
Helix 24	AC6	H	480	488	Right-handed alpha
Helix 25	AC7	H	488	495	Right-handed alpha
Helix 26	AC8	H	498	506	Right-handed alpha
Helix 27	AC9	G	3	20	Right-handed alpha
Helix 28	AD1	G	25	46	Right-handed alpha
Helix 29	AD2	G	74	101	Right-handed alpha
Helix 30	AD3	D	15	36	Right-handed alpha
Helix 31	AD4	D	38	60	Right-handed alpha
Helix 32	AD5	D	62	74	Right-handed alpha
Helix 33	AD6	D	76	88	Right-handed alpha
Helix 34	AD7	I	5	7	Right-handed 310
Helix 35	AD8	I	8	31	Right-handed alpha
Helix 36	AD9	I	74	87	Right-handed alpha
Helix 37	AE1	I	92	114	Right-handed alpha
Helix 38	AE2	M	4	35	Right-handed alpha
Helix 39	AE3	M	45	56	Right-handed alpha
Helix 40	AE4	M	70	81	Right-handed alpha
Helix 41	AE5	M	82	86	Right-handed 310
Helix 42	AE6	M	100	120	Right-handed alpha
Helix 43	AE7	M	124	140	Right-handed alpha
Helix 44	AE8	M	142	155	Right-handed alpha
Helix 45	AE9	M	165	171	Right-handed 310
Helix 46	AF1	M	180	200	Right-handed alpha
Helix 47	AF2	M	224	250	Right-handed alpha
Helix 48	AF3	M	260	288	Right-handed alpha
Helix 49	AF4	M	293	301	Right-handed alpha
Helix 50	AF5	M	304	317	Right-handed alpha
Helix 51	AF6	F	7	30	Right-handed alpha
Helix 52	AF7	F	37	56	Right-handed alpha
Helix 53	AF8	F	57	63	Right-handed alpha
Helix 54	AF9	F	68	84	Right-handed alpha
Helix 55	AG1	F	117	142	Right-handed alpha
Helix 56	AG2	A	3	18	Right-handed alpha
Helix 57	AG3	A	29	45	Right-handed alpha
Helix 58	AG4	A	53	57	Right-handed 310
Helix 59	AG5	A	58	88	Right-handed alpha
Helix 60	AG6	A	107	115	Right-handed alpha
Helix 61	AG7	A	157	164	Right-handed alpha
Helix 62	AG8	E	2	21	Right-handed alpha
Helix 63	AG9	E	34	38	Right-handed 310
Helix 64	AH1	E	40	49	Right-handed alpha
Helix 65	AH2	E	50	55	Right-handed alpha
Helix 66	AH3	E	59	64	Right-handed alpha
Helix 67	AH4	E	68	89	Right-handed alpha
Helix 68	AH5	C	4	24	Right-handed alpha
Helix 69	AH6	C	30	64	Right-handed alpha
Helix 70	AH7	C	67	100	Right-handed alpha
Helix 71	AH8	B	4	23	Right-handed alpha
Helix 72	AH9	B	27	52	Right-handed alpha
Helix 73	AI1	B	57	79	Right-handed alpha
Helix 74	AI2	J	19	23	Right-handed 310
Helix 75	AI3	J	37	44	Right-handed alpha
Helix 76	AI4	J	76	78	Right-handed 310
Helix 77	AI5	J	79	86	Right-handed alpha
Helix 78	AI6	J	118	122	Right-handed 310
Helix 79	AI7	J	135	155	Right-handed alpha
Helix 80	AI8	K	6	15	Right-handed alpha
Helix 81	AI9	K	37	52	Right-handed alpha
Helix 82	AJ1	K	109	121	Right-handed alpha
Helix 83	AJ2	K	165	169	Right-handed 310
Helix 84	AJ3	L	47	53	Right-handed alpha
Helix 85	AJ4	L	56	64	Right-handed alpha
Helix 86	AJ5	L	65	68	Right-handed 310
Helix 87	AJ6	L	73	88	Right-handed alpha
Helix 88	AJ7	L	92	119	Right-handed alpha
Helix 89	AJ8	L	124	135	Right-handed alpha
Helix 90	AJ9	L	135	146	Right-handed alpha
Helix 91	AK1	L	166	180	Right-handed alpha
Helix 92	AK2	L	182	192	Right-handed alpha
Helix 93	AK3	L	195	199	Right-handed 310
Helix 94	AK4	L	207	214	Right-handed alpha
Helix 95	AK5	L	218	225	Right-handed alpha
Helix 96	AK6	L	239	243	Right-handed 310
Helix 97	AK7	L	248	253	Right-handed alpha
Helix 98	AK8	L	261	282	Right-handed alpha
Helix 99	AK9	L	344	356	Right-handed alpha
Helix 100	AL1	L	362	369	Right-handed alpha
Helix 101	AL2	L	370	372	Right-handed 310
Helix 102	AL3	L	374	378	Right-handed 310
Helix 103	AL4	N	6	15	Right-handed alpha
Helix 104	AL5	N	22	26	Right-handed 310
Helix 105	AL6	N	51	56	Right-handed alpha
Helix 106	AL7	N	75	77	Right-handed 310
Helix 107	AL8	N	114	122	Right-handed alpha

There are 10 sheets in PDB entry 6CFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	77	79	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	58	first strand
Strand 2	G	69	70	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	37	first strand
Strand 2	M	58	60	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	124	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	28	first strand
Strand 2	J	68	69	parallel
Strand 3	J	95	99	parallel
Strand 4	J	127	129	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	24	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	85	92	parallel
Strand 4	K	70	77	anti-parallel
Strand 5	K	57	62	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	10	first strand
Strand 2	L	24	30	anti-parallel
Strand 3	L	33	40	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	313	317	first strand
Strand 2	L	322	328	anti-parallel
Strand 3	L	338	342	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	39	41	first strand
Strand 2	N	92	94	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	63	first strand
Strand 2	N	70	73	anti-parallel
Strand 3	N	111	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CFW