Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CGA entry

There are 4 chains in PDB entry 6CGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 44SER 398
B
 THR 214LYS 309
C
 TRP 46GLN 399
D
 THR 214LYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6CGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 62Right-handed alpha
Helix 2
AA2
A
130 141Right-handed alpha
Helix 3
AA3
A
151 161Right-handed alpha
Helix 4
AA4
A
165 176Right-handed alpha
Helix 5
AA5
A
176 185Right-handed alpha
Helix 6
AA6
A
245 253Right-handed alpha
Helix 7
AA7
A
277 295Right-handed alpha
Helix 8
AA8
A
337 374Right-handed alpha
Helix 9
AA9
A
376 391Right-handed alpha
Helix 10
AB1
B
223 228Right-handed alpha
Helix 11
AB2
B
229 234Right-handed alpha
Helix 12
AB3
B
237 246Right-handed alpha
Helix 13
AB4
B
277 281Right-handed 310
Helix 14
AB5
B
283 299Right-handed alpha
Helix 15
AB6
B
303 307Right-handed 310
Helix 16
AB7
C
52 62Right-handed alpha
Helix 17
AB8
C
130 141Right-handed alpha
Helix 18
AB9
C
151 161Right-handed alpha
Helix 19
AC1
C
165 176Right-handed alpha
Helix 20
AC2
C
176 185Right-handed alpha
Helix 21
AC3
C
247 253Right-handed alpha
Helix 22
AC4
C
277 295Right-handed alpha
Helix 23
AC5
C
337 374Right-handed alpha
Helix 24
AC6
C
376 390Right-handed alpha
Helix 25
AC7
D
223 228Right-handed alpha
Helix 26
AC8
D
229 234Right-handed alpha
Helix 27
AC9
D
237 246Right-handed alpha
Helix 28
AD1
D
277 282Right-handed 310
Helix 29
AD2
D
283 299Right-handed alpha
Helix 30
AD3
D
303 307Right-handed 310
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There are 2 sheets in PDB entry 6CGA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
85 89anti-parallel
Strand 4
A
214 219anti-parallel
Strand 5
A
224 228anti-parallel
Strand 6
A
235 236anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
270 275anti-parallel
Strand 3
C
85 89anti-parallel
Strand 4
C
214 219anti-parallel
Strand 5
C
224 228anti-parallel
Strand 6
C
235 236anti-parallel
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