Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CGE entry

There are 2 chains in PDB entry 6CGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 285
B
 ALA 1GLY 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6CGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
38 41Right-handed 310
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
68 78Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
115 133Right-handed alpha
Helix 8
AA8
A
144 146Right-handed 310
Helix 9
AA9
A
152 173Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
200 207Right-handed alpha
Helix 12
AB3
A
208 230Right-handed alpha
Helix 13
AB4
A
232 246Right-handed alpha
Helix 14
AB5
A
259 267Right-handed alpha
Helix 15
AB6
A
272 284Right-handed alpha
Helix 16
AB7
B
12 25Right-handed alpha
Helix 17
AB8
B
38 41Right-handed 310
Helix 18
AB9
B
42 52Right-handed alpha
Helix 19
AC1
B
68 78Right-handed alpha
Helix 20
AC2
B
98 102Right-handed 310
Helix 21
AC3
B
103 115Right-handed alpha
Helix 22
AC4
B
115 133Right-handed alpha
Helix 23
AC5
B
144 146Right-handed 310
Helix 24
AC6
B
152 174Right-handed alpha
Helix 25
AC7
B
200 206Right-handed alpha
Helix 26
AC8
B
208 230Right-handed alpha
Helix 27
AC9
B
232 246Right-handed alpha
Helix 28
AD1
B
259 269Right-handed alpha
Helix 29
AD2
B
272 284Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6CGE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
30 36parallel
Strand 3
A
3 7parallel
Strand 4
A
86 89parallel
Strand 5
A
135 142parallel
Strand 6
A
178 185parallel
Strand 7
A
252 254parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
30 36parallel
Strand 3
B
3 7parallel
Strand 4
B
86 89parallel
Strand 5
B
135 142parallel
Strand 6
B
178 185parallel
Strand 7
B
252 254parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il