Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CGM entry

There is 1 chain in PDB entry 6CGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6CGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
27 40Right-handed alpha
Helix 4
AA4
A
50 61Right-handed alpha
Helix 5
AA5
A
66 71Right-handed alpha
Helix 6
AA6
A
73 87Right-handed alpha
Helix 7
AA7
A
93 104Right-handed alpha
Helix 8
AA8
A
117 131Right-handed alpha
Helix 9
AA9
A
133 146Right-handed alpha
Helix 10
AB1
A
152 159Right-handed alpha
Helix 11
AB2
A
178 194Right-handed alpha
Helix 12
AB3
A
223 234Right-handed alpha
Helix 13
AB4
A
257 264Right-handed alpha
Helix 14
AB5
A
285 294Right-handed alpha
Helix 15
AB6
A
302 311Right-handed alpha
Helix 16
AB7
A
313 317Right-handed 310
Helix 17
AB8
A
318 329Right-handed alpha
Helix 18
AB9
A
338 354Right-handed alpha
Helix 19
AC1
A
361 366Right-handed alpha
Helix 20
AC2
A
416 423Right-handed alpha
Helix 21
AC3
A
424 443Right-handed alpha
Helix 22
AC4
A
448 459Right-handed alpha
Helix 23
AC5
A
467 475Right-handed alpha
Helix 24
AC6
A
481 511Right-handed alpha
Helix 25
AC7
A
516 519Right-handed 310
Helix 26
AC8
A
520 525Right-handed alpha
Helix 27
AC9
A
528 534Right-handed alpha
Helix 28
AD1
A
540 547Right-handed alpha
Helix 29
AD2
A
554 569Right-handed alpha
Helix 30
AD3
A
583 588Right-handed alpha
Helix 31
AD4
A
619 626Right-handed 310
Helix 32
AD5
A
628 632Right-handed 310
Helix 33
AD6
A
633 646Right-handed alpha
Helix 34
AD7
A
663 677Right-handed alpha
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There are 5 sheets in PDB entry 6CGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
407 415anti-parallel
Strand 3
A
461 466parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
407 415anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
246 252parallel
Strand 6
A
279 284parallel
Strand 7
A
357 360parallel
Strand 8
A
681 682anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
334 337anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 606first strand
Strand 2
A
609 614anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 658first strand
Strand 2
A
685 687parallel
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