Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CGO entry

There are 2 chains in PDB entry 6CGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE -7	LEU 512
B	GLN -6	LEU 512

There are 36 helices in PDB entry 6CGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-3	1	Right-handed 310
Helix 2	AA2	A	2	13	Right-handed alpha
Helix 3	AA3	A	34	44	Right-handed alpha
Helix 4	AA4	A	44	57	Right-handed alpha
Helix 5	AA5	A	74	85	Right-handed alpha
Helix 6	AA6	A	91	93	Right-handed 310
Helix 7	AA7	A	106	121	Right-handed alpha
Helix 8	AA8	A	122	124	Right-handed 310
Helix 9	AA9	A	141	145	Right-handed 310
Helix 10	AB1	A	157	175	Right-handed alpha
Helix 11	AB2	A	209	225	Right-handed alpha
Helix 12	AB3	A	236	250	Right-handed alpha
Helix 13	AB4	A	253	266	Right-handed alpha
Helix 14	AB5	A	294	308	Right-handed alpha
Helix 15	AB6	A	311	329	Right-handed alpha
Helix 16	AB7	A	344	348	Right-handed 310
Helix 17	AB8	A	369	387	Right-handed alpha
Helix 18	AB9	A	478	498	Right-handed alpha
Helix 19	AC1	B	-3	1	Right-handed 310
Helix 20	AC2	B	2	13	Right-handed alpha
Helix 21	AC3	B	34	44	Right-handed alpha
Helix 22	AC4	B	44	57	Right-handed alpha
Helix 23	AC5	B	74	85	Right-handed alpha
Helix 24	AC6	B	91	93	Right-handed 310
Helix 25	AC7	B	106	121	Right-handed alpha
Helix 26	AC8	B	122	124	Right-handed 310
Helix 27	AC9	B	141	145	Right-handed 310
Helix 28	AD1	B	157	175	Right-handed alpha
Helix 29	AD2	B	209	225	Right-handed alpha
Helix 30	AD3	B	236	250	Right-handed alpha
Helix 31	AD4	B	253	266	Right-handed alpha
Helix 32	AD5	B	294	308	Right-handed alpha
Helix 33	AD6	B	311	329	Right-handed alpha
Helix 34	AD7	B	344	348	Right-handed 310
Helix 35	AD8	B	369	387	Right-handed alpha
Helix 36	AD9	B	478	498	Right-handed alpha

There are 10 sheets in PDB entry 6CGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	B	507	511	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	103	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	185	193	anti-parallel
Strand 4	A	148	151	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	131	first strand
Strand 2	A	134	139	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	363	first strand
Strand 2	A	332	340	anti-parallel
Strand 3	A	412	418	parallel
Strand 4	A	455	461	parallel
Strand 5	A	466	473	anti-parallel
Strand 6	A	282	293	anti-parallel
Strand 7	A	441	442	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	363	first strand
Strand 2	A	332	340	anti-parallel
Strand 3	A	412	418	parallel
Strand 4	A	455	461	parallel
Strand 5	A	466	473	anti-parallel
Strand 6	A	282	293	anti-parallel
Strand 7	A	446	452	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	511	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	16	20	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	103	first strand
Strand 2	B	196	204	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	148	151	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	135	139	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	363	first strand
Strand 2	B	332	340	anti-parallel
Strand 3	B	412	418	parallel
Strand 4	B	455	461	parallel
Strand 5	B	466	473	anti-parallel
Strand 6	B	282	293	anti-parallel
Strand 7	B	441	442	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	363	first strand
Strand 2	B	332	340	anti-parallel
Strand 3	B	412	418	parallel
Strand 4	B	455	461	parallel
Strand 5	B	466	473	anti-parallel
Strand 6	B	282	293	anti-parallel
Strand 7	B	446	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGO