Analysis of interatomic Contacts of Structural Units in PDB entry:
6CGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CGQ entry

There are 2 chains in PDB entry 6CGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4GLY 348
B
 TRP 2VAL 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6CGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
10 13Right-handed 310
Helix 3
AA3
A
34 42Right-handed alpha
Helix 4
AA4
A
51 53Right-handed 310
Helix 5
AA5
A
58 74Right-handed alpha
Helix 6
AA6
A
84 97Right-handed alpha
Helix 7
AA7
A
115 122Right-handed alpha
Helix 8
AA8
A
131 144Right-handed alpha
Helix 9
AA9
A
155 174Right-handed alpha
Helix 10
AB1
A
187 205Right-handed alpha
Helix 11
AB2
A
220 225Right-handed alpha
Helix 12
AB3
A
235 239Right-handed 310
Helix 13
AB4
A
245 256Right-handed alpha
Helix 14
AB5
A
264 280Right-handed alpha
Helix 15
AB6
A
284 287Right-handed 310
Helix 16
AB7
A
288 300Right-handed alpha
Helix 17
AB8
A
316 319Right-handed 310
Helix 18
AB9
A
320 328Right-handed alpha
Helix 19
AC1
A
338 348Right-handed alpha
Helix 20
AC2
B
4 9Right-handed alpha
Helix 21
AC3
B
10 13Right-handed 310
Helix 22
AC4
B
34 42Right-handed alpha
Helix 23
AC5
B
51 53Right-handed 310
Helix 24
AC6
B
58 73Right-handed alpha
Helix 25
AC7
B
84 98Right-handed alpha
Helix 26
AC8
B
111 120Right-handed alpha
Helix 27
AC9
B
131 146Right-handed alpha
Helix 28
AD1
B
155 163Right-handed alpha
Helix 29
AD2
B
163 174Right-handed alpha
Helix 30
AD3
B
187 205Right-handed alpha
Helix 31
AD4
B
220 225Right-handed alpha
Helix 32
AD5
B
235 239Right-handed 310
Helix 33
AD6
B
245 256Right-handed alpha
Helix 34
AD7
B
264 280Right-handed alpha
Helix 35
AD8
B
284 287Right-handed 310
Helix 36
AD9
B
288 300Right-handed alpha
Helix 37
AE1
B
316 319Right-handed 310
Helix 38
AE2
B
320 328Right-handed alpha
Helix 39
AE3
B
338 346Right-handed alpha
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There are 4 sheets in PDB entry 6CGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
308 313parallel
Strand 4
A
179 183parallel
Strand 5
A
210 216parallel
Strand 6
A
259 263parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
100 106parallel
Strand 3
A
77 81parallel
Strand 4
A
148 150parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
308 313parallel
Strand 4
B
179 183parallel
Strand 5
B
210 216parallel
Strand 6
B
259 263parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
100 106parallel
Strand 3
B
77 81parallel
Strand 4
B
149 150parallel
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