Analysis of interatomic Contacts of Structural Units in PDB entry:
6CI7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CI7 entry

There are 6 chains in PDB entry 6CI7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 2	GLY 374
B	MSE 2	GLY 374
C	MSE 2	GLY 374
D	MSE 2	GLY 374
E	MSE 2	GLY 374
F	MSE 2	GLY 374

There are 78 helices in PDB entry 6CI7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	28	33	Right-handed alpha
Helix 3	AA3	A	68	86	Right-handed alpha
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	131	133	Right-handed 310
Helix 6	AA6	A	154	178	Right-handed alpha
Helix 7	AA7	A	188	200	Right-handed alpha
Helix 8	AA8	A	228	232	Right-handed 310
Helix 9	AA9	A	241	262	Right-handed alpha
Helix 10	AB1	A	282	290	Right-handed alpha
Helix 11	AB2	A	290	295	Right-handed alpha
Helix 12	AB3	A	303	305	Right-handed 310
Helix 13	AB4	A	313	327	Right-handed alpha
Helix 14	AB5	B	16	27	Right-handed alpha
Helix 15	AB6	B	28	33	Right-handed alpha
Helix 16	AB7	B	68	86	Right-handed alpha
Helix 17	AB8	B	89	93	Right-handed 310
Helix 18	AB9	B	131	133	Right-handed 310
Helix 19	AC1	B	154	178	Right-handed alpha
Helix 20	AC2	B	188	200	Right-handed alpha
Helix 21	AC3	B	228	232	Right-handed 310
Helix 22	AC4	B	241	262	Right-handed alpha
Helix 23	AC5	B	282	290	Right-handed alpha
Helix 24	AC6	B	290	295	Right-handed alpha
Helix 25	AC7	B	303	305	Right-handed 310
Helix 26	AC8	B	313	327	Right-handed alpha
Helix 27	AC9	C	16	27	Right-handed alpha
Helix 28	AD1	C	28	33	Right-handed alpha
Helix 29	AD2	C	68	86	Right-handed alpha
Helix 30	AD3	C	89	93	Right-handed 310
Helix 31	AD4	C	130	134	Right-handed alpha
Helix 32	AD5	C	154	179	Right-handed alpha
Helix 33	AD6	C	188	200	Right-handed alpha
Helix 34	AD7	C	228	232	Right-handed 310
Helix 35	AD8	C	241	262	Right-handed alpha
Helix 36	AD9	C	282	290	Right-handed alpha
Helix 37	AE1	C	290	295	Right-handed alpha
Helix 38	AE2	C	303	305	Right-handed 310
Helix 39	AE3	C	313	327	Right-handed alpha
Helix 40	AE4	D	16	28	Right-handed alpha
Helix 41	AE5	D	28	33	Right-handed alpha
Helix 42	AE6	D	68	86	Right-handed alpha
Helix 43	AE7	D	89	93	Right-handed 310
Helix 44	AE8	D	130	134	Right-handed alpha
Helix 45	AE9	D	154	179	Right-handed alpha
Helix 46	AF1	D	188	200	Right-handed alpha
Helix 47	AF2	D	228	232	Right-handed 310
Helix 48	AF3	D	241	261	Right-handed alpha
Helix 49	AF4	D	282	290	Right-handed alpha
Helix 50	AF5	D	290	295	Right-handed alpha
Helix 51	AF6	D	303	305	Right-handed 310
Helix 52	AF7	D	313	327	Right-handed alpha
Helix 53	AF8	E	16	27	Right-handed alpha
Helix 54	AF9	E	28	33	Right-handed alpha
Helix 55	AG1	E	68	86	Right-handed alpha
Helix 56	AG2	E	89	93	Right-handed 310
Helix 57	AG3	E	131	133	Right-handed 310
Helix 58	AG4	E	154	179	Right-handed alpha
Helix 59	AG5	E	188	203	Right-handed alpha
Helix 60	AG6	E	228	232	Right-handed 310
Helix 61	AG7	E	241	262	Right-handed alpha
Helix 62	AG8	E	282	289	Right-handed alpha
Helix 63	AG9	E	290	295	Right-handed alpha
Helix 64	AH1	E	303	305	Right-handed 310
Helix 65	AH2	E	313	327	Right-handed alpha
Helix 66	AH3	F	16	27	Right-handed alpha
Helix 67	AH4	F	28	33	Right-handed alpha
Helix 68	AH5	F	68	86	Right-handed alpha
Helix 69	AH6	F	89	93	Right-handed 310
Helix 70	AH7	F	131	133	Right-handed 310
Helix 71	AH8	F	154	179	Right-handed alpha
Helix 72	AH9	F	188	200	Right-handed alpha
Helix 73	AI1	F	228	232	Right-handed 310
Helix 74	AI2	F	241	261	Right-handed alpha
Helix 75	AI3	F	283	290	Right-handed alpha
Helix 76	AI4	F	290	295	Right-handed alpha
Helix 77	AI5	F	303	305	Right-handed 310
Helix 78	AI6	F	313	328	Right-handed alpha

There are 25 sheets in PDB entry 6CI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	43	first strand
Strand 2	A	46	55	anti-parallel
Strand 3	A	58	65	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	114	119	anti-parallel
Strand 3	A	333	337	anti-parallel
Strand 4	A	347	352	anti-parallel
Strand 5	A	149	151	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	299	301	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	218	225	anti-parallel
Strand 3	A	234	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	46	55	anti-parallel
Strand 3	B	58	65	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	114	119	anti-parallel
Strand 3	B	333	337	anti-parallel
Strand 4	B	347	352	anti-parallel
Strand 5	B	149	151	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	299	301	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	234	239	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	12	13	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	43	first strand
Strand 2	C	46	55	anti-parallel
Strand 3	C	58	65	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	114	119	anti-parallel
Strand 3	C	333	337	anti-parallel
Strand 4	C	347	352	anti-parallel
Strand 5	C	149	151	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	299	301	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	210	first strand
Strand 2	C	218	225	anti-parallel
Strand 3	C	234	239	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	43	first strand
Strand 2	D	46	55	anti-parallel
Strand 3	D	58	65	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	114	119	anti-parallel
Strand 3	D	333	337	anti-parallel
Strand 4	D	347	352	anti-parallel
Strand 5	D	149	151	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	299	301	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	210	first strand
Strand 2	D	218	225	anti-parallel
Strand 3	D	234	239	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	43	first strand
Strand 2	E	46	55	anti-parallel
Strand 3	E	58	65	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	114	119	anti-parallel
Strand 3	E	333	337	anti-parallel
Strand 4	E	347	352	anti-parallel
Strand 5	E	149	151	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	299	301	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	210	first strand
Strand 2	E	218	225	anti-parallel
Strand 3	E	234	239	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	43	first strand
Strand 2	F	46	55	anti-parallel
Strand 3	F	58	65	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	114	119	anti-parallel
Strand 3	F	333	337	anti-parallel
Strand 4	F	347	352	anti-parallel
Strand 5	F	149	151	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	186	first strand
Strand 2	F	299	301	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	210	first strand
Strand 2	F	218	225	anti-parallel
Strand 3	F	234	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CI7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CI7