Analysis of interatomic Contacts of Structural Units in PDB entry:
6CIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CIJ entry

There are 11 chains in PDB entry 6CIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 395	ALA 1008
C	PRO 392	ASN 1007
F	C 1	C 46
I	G 1	A 16
J	C -2	A 16
G	C 1	G 60
N	PRO 9	ASP 158
L	C 17	G 46
D	MET 1	SER 351
B	MET 1	SER 351
M	C 17	G 57

There are 70 helices in PDB entry 6CIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	403	423	Right-handed alpha
Helix 2	AA2	A	426	442	Right-handed alpha
Helix 3	AA3	A	444	455	Right-handed alpha
Helix 4	AA4	A	463	474	Right-handed alpha
Helix 5	AA5	A	477	493	Right-handed alpha
Helix 6	AA6	A	499	511	Right-handed alpha
Helix 7	AA7	A	558	570	Right-handed alpha
Helix 8	AA8	A	570	581	Right-handed alpha
Helix 9	AA9	A	648	652	Right-handed 310
Helix 10	AB1	A	664	683	Right-handed alpha
Helix 11	AB2	A	708	716	Right-handed alpha
Helix 12	AB3	A	733	740	Right-handed alpha
Helix 13	AB4	A	749	763	Right-handed alpha
Helix 14	AB5	A	768	777	Right-handed alpha
Helix 15	AB6	A	792	813	Right-handed alpha
Helix 16	AB7	A	822	842	Right-handed alpha
Helix 17	AB8	A	851	858	Right-handed alpha
Helix 18	AB9	A	859	868	Right-handed alpha
Helix 19	AC1	A	873	890	Right-handed alpha
Helix 20	AC2	A	891	894	Right-handed 310
Helix 21	AC3	A	897	902	Right-handed alpha
Helix 22	AC4	A	902	908	Right-handed alpha
Helix 23	AC5	A	908	924	Right-handed alpha
Helix 24	AC6	A	933	942	Right-handed alpha
Helix 25	AC7	A	942	951	Right-handed alpha
Helix 26	AC8	A	958	975	Right-handed alpha
Helix 27	AC9	A	982	995	Right-handed alpha
Helix 28	AD1	A	996	1001	Right-handed alpha
Helix 29	AD2	C	400	421	Right-handed alpha
Helix 30	AD3	C	426	441	Right-handed alpha
Helix 31	AD4	C	444	457	Right-handed alpha
Helix 32	AD5	C	463	474	Right-handed alpha
Helix 33	AD6	C	477	492	Right-handed alpha
Helix 34	AD7	C	499	507	Right-handed alpha
Helix 35	AD8	C	508	510	Right-handed 310
Helix 36	AD9	C	558	570	Right-handed alpha
Helix 37	AE1	C	570	581	Right-handed alpha
Helix 38	AE2	C	648	652	Right-handed 310
Helix 39	AE3	C	664	683	Right-handed alpha
Helix 40	AE4	C	708	716	Right-handed alpha
Helix 41	AE5	C	735	739	Right-handed 310
Helix 42	AE6	C	749	763	Right-handed alpha
Helix 43	AE7	C	768	777	Right-handed alpha
Helix 44	AE8	C	792	813	Right-handed alpha
Helix 45	AE9	C	822	841	Right-handed alpha
Helix 46	AF1	C	850	858	Right-handed alpha
Helix 47	AF2	C	859	867	Right-handed alpha
Helix 48	AF3	C	868	870	Right-handed 310
Helix 49	AF4	C	873	895	Right-handed alpha
Helix 50	AF5	C	897	902	Right-handed alpha
Helix 51	AF6	C	902	908	Right-handed alpha
Helix 52	AF7	C	908	923	Right-handed alpha
Helix 53	AF8	C	933	942	Right-handed alpha
Helix 54	AF9	C	942	950	Right-handed alpha
Helix 55	AG1	C	953	957	Right-handed 310
Helix 56	AG2	C	958	975	Right-handed alpha
Helix 57	AG3	C	982	996	Right-handed alpha
Helix 58	AG4	C	996	1002	Right-handed alpha
Helix 59	AG5	N	16	30	Right-handed alpha
Helix 60	AG6	N	38	43	Right-handed alpha
Helix 61	AG7	N	44	49	Right-handed alpha
Helix 62	AG8	N	57	66	Right-handed alpha
Helix 63	AG9	N	67	72	Right-handed alpha
Helix 64	AH1	N	100	117	Right-handed alpha
Helix 65	AH2	N	121	134	Right-handed alpha
Helix 66	AH3	N	142	158	Right-handed alpha
Helix 67	AH4	D	168	172	Right-handed 310
Helix 68	AH5	D	310	314	Right-handed 310
Helix 69	AH6	B	11	15	Right-handed 310
Helix 70	AH7	B	308	313	Right-handed alpha

There are 24 sheets in PDB entry 6CIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	688	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	620	633	anti-parallel
Strand 5	A	636	642	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	620	633	anti-parallel
Strand 5	A	590	601	anti-parallel
Strand 6	A	697	706	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	691	first strand
Strand 2	A	694	695	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	590	603	parallel
Strand 5	C	618	633	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	590	603	parallel
Strand 5	C	618	633	anti-parallel
Strand 6	C	636	642	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	30	anti-parallel
Strand 3	D	46	47	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	54	56	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	120	122	parallel
Strand 3	D	114	115	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	78	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	107	110	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	185	anti-parallel
Strand 4	D	151	156	anti-parallel
Strand 5	D	141	146	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	247	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	250	252	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	267	first strand
Strand 2	D	270	273	anti-parallel
Strand 3	D	288	291	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	30	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	107	109	anti-parallel
Strand 3	B	125	127	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	120	122	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	151	156	anti-parallel
Strand 5	B	141	146	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	237	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	288	289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CIJ