Analysis of interatomic Contacts of Structural Units in PDB entry:
6CIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CIQ entry

There are 2 chains in PDB entry 6CIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLU 1170
B	PRO 2	ALA 154

There are153 helices in PDB entry 6CIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	20	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	61	76	Right-handed alpha
Helix 4	AA4	A	84	101	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed alpha
Helix 6	AA6	A	143	162	Right-handed alpha
Helix 7	AA7	A	185	191	Right-handed alpha
Helix 8	AA8	A	194	204	Right-handed alpha
Helix 9	AA9	A	222	229	Right-handed alpha
Helix 10	AB1	A	230	253	Right-handed alpha
Helix 11	AB2	A	276	291	Right-handed alpha
Helix 12	AB3	A	307	314	Right-handed alpha
Helix 13	AB4	A	336	349	Right-handed alpha
Helix 14	AB5	A	368	381	Right-handed alpha
Helix 15	AB6	A	426	442	Right-handed alpha
Helix 16	AB7	A	488	492	Right-handed 310
Helix 17	AB8	A	517	522	Right-handed alpha
Helix 18	AB9	A	523	533	Right-handed alpha
Helix 19	AC1	A	541	549	Right-handed alpha
Helix 20	AC2	A	555	568	Right-handed alpha
Helix 21	AC3	A	571	588	Right-handed alpha
Helix 22	AC4	A	591	608	Right-handed alpha
Helix 23	AC5	A	615	621	Right-handed 310
Helix 24	AC6	A	633	639	Right-handed alpha
Helix 25	AC7	A	639	645	Right-handed alpha
Helix 26	AC8	A	647	651	Right-handed 310
Helix 27	AC9	A	652	656	Right-handed 310
Helix 28	AD1	A	666	670	Right-handed 310
Helix 29	AD2	A	690	696	Right-handed alpha
Helix 30	AD3	A	707	712	Right-handed 310
Helix 31	AD4	A	746	752	Right-handed alpha
Helix 32	AD5	A	764	780	Right-handed alpha
Helix 33	AD6	A	792	798	Right-handed alpha
Helix 34	AD7	A	814	826	Right-handed alpha
Helix 35	AD8	A	836	841	Right-handed alpha
Helix 36	AD9	A	868	896	Right-handed alpha
Helix 37	AE1	A	900	913	Right-handed alpha
Helix 38	AE2	A	916	937	Right-handed alpha
Helix 39	AE3	A	940	952	Right-handed alpha
Helix 40	AE4	A	953	956	Right-handed 310
Helix 41	AE5	A	967	972	Right-handed alpha
Helix 42	AE6	A	974	985	Right-handed alpha
Helix 43	AE7	A	1028	1035	Right-handed alpha
Helix 44	AE8	A	1049	1063	Right-handed alpha
Helix 45	AE9	A	1075	1079	Right-handed 310
Helix 46	AF1	A	1081	1083	Right-handed 310
Helix 47	AF2	A	1084	1095	Right-handed alpha
Helix 48	AF3	A	1104	1110	Right-handed alpha
Helix 49	AF4	A	1125	1131	Right-handed alpha
Helix 50	AF5	A	1133	1143	Right-handed alpha
Helix 51	AF6	A	1143	1170	Right-handed alpha
Helix 52	AF7	B	8	20	Right-handed alpha
Helix 53	AF8	B	31	44	Right-handed alpha
Helix 54	AF9	B	61	76	Right-handed alpha
Helix 55	AG1	B	85	101	Right-handed alpha
Helix 56	AG2	B	125	130	Right-handed alpha
Helix 57	AG3	B	143	162	Right-handed alpha
Helix 58	AG4	B	185	191	Right-handed alpha
Helix 59	AG5	B	194	204	Right-handed alpha
Helix 60	AG6	B	222	229	Right-handed alpha
Helix 61	AG7	B	230	253	Right-handed alpha
Helix 62	AG8	B	276	291	Right-handed alpha
Helix 63	AG9	B	307	314	Right-handed alpha
Helix 64	AH1	B	336	349	Right-handed alpha
Helix 65	AH2	B	368	381	Right-handed alpha
Helix 66	AH3	B	426	442	Right-handed alpha
Helix 67	AH4	B	488	492	Right-handed 310
Helix 68	AH5	B	517	522	Right-handed alpha
Helix 69	AH6	B	523	533	Right-handed alpha
Helix 70	AH7	B	541	549	Right-handed alpha
Helix 71	AH8	B	555	568	Right-handed alpha
Helix 72	AH9	B	571	588	Right-handed alpha
Helix 73	AI1	B	592	607	Right-handed alpha
Helix 74	AI2	B	615	621	Right-handed 310
Helix 75	AI3	B	633	639	Right-handed alpha
Helix 76	AI4	B	639	645	Right-handed alpha
Helix 77	AI5	B	647	651	Right-handed 310
Helix 78	AI6	B	652	656	Right-handed 310
Helix 79	AI7	B	666	670	Right-handed 310
Helix 80	AI8	B	690	696	Right-handed alpha
Helix 81	AI9	B	707	712	Right-handed 310
Helix 82	AJ1	B	746	752	Right-handed alpha
Helix 83	AJ2	B	764	780	Right-handed alpha
Helix 84	AJ3	B	792	798	Right-handed alpha
Helix 85	AJ4	B	814	826	Right-handed alpha
Helix 86	AJ5	B	836	841	Right-handed alpha
Helix 87	AJ6	B	868	896	Right-handed alpha
Helix 88	AJ7	B	900	913	Right-handed alpha
Helix 89	AJ8	B	916	937	Right-handed alpha
Helix 90	AJ9	B	940	952	Right-handed alpha
Helix 91	AK1	B	953	956	Right-handed 310
Helix 92	AK2	B	967	972	Right-handed alpha
Helix 93	AK3	B	974	985	Right-handed alpha
Helix 94	AK4	B	1028	1035	Right-handed alpha
Helix 95	AK5	B	1049	1063	Right-handed alpha
Helix 96	AK6	B	1075	1079	Right-handed 310
Helix 97	AK7	B	1081	1083	Right-handed 310
Helix 98	AK8	B	1084	1095	Right-handed alpha
Helix 99	AK9	B	1104	1110	Right-handed alpha
Helix 100	AL1	B	1125	1131	Right-handed alpha
Helix 101	AL2	B	1133	1143	Right-handed alpha
Helix 102	AL3	B	1143	1170	Right-handed alpha
Helix 103	AL4	C	8	20	Right-handed alpha
Helix 104	AL5	C	31	44	Right-handed alpha
Helix 105	AL6	C	61	76	Right-handed alpha
Helix 106	AL7	C	84	101	Right-handed alpha
Helix 107	AL8	C	125	130	Right-handed alpha
Helix 108	AL9	C	143	162	Right-handed alpha
Helix 109	AM1	C	185	191	Right-handed alpha
Helix 110	AM2	C	194	204	Right-handed alpha
Helix 111	AM3	C	222	229	Right-handed alpha
Helix 112	AM4	C	230	253	Right-handed alpha
Helix 113	AM5	C	276	291	Right-handed alpha
Helix 114	AM6	C	307	314	Right-handed alpha
Helix 115	AM7	C	336	349	Right-handed alpha
Helix 116	AM8	C	368	381	Right-handed alpha
Helix 117	AM9	C	426	442	Right-handed alpha
Helix 118	AN1	C	488	492	Right-handed 310
Helix 119	AN2	C	517	522	Right-handed alpha
Helix 120	AN3	C	523	533	Right-handed alpha
Helix 121	AN4	C	541	549	Right-handed alpha
Helix 122	AN5	C	555	568	Right-handed alpha
Helix 123	AN6	C	571	588	Right-handed alpha
Helix 124	AN7	C	591	608	Right-handed alpha
Helix 125	AN8	C	615	621	Right-handed 310
Helix 126	AN9	C	633	639	Right-handed alpha
Helix 127	AO1	C	639	645	Right-handed alpha
Helix 128	AO2	C	647	651	Right-handed 310
Helix 129	AO3	C	652	656	Right-handed 310
Helix 130	AO4	C	666	670	Right-handed 310
Helix 131	AO5	C	690	696	Right-handed alpha
Helix 132	AO6	C	707	712	Right-handed 310
Helix 133	AO7	C	746	752	Right-handed alpha
Helix 134	AO8	C	764	780	Right-handed alpha
Helix 135	AO9	C	792	798	Right-handed alpha
Helix 136	AP1	C	814	826	Right-handed alpha
Helix 137	AP2	C	836	841	Right-handed alpha
Helix 138	AP3	C	868	896	Right-handed alpha
Helix 139	AP4	C	900	913	Right-handed alpha
Helix 140	AP5	C	916	937	Right-handed alpha
Helix 141	AP6	C	939	952	Right-handed alpha
Helix 142	AP7	C	953	956	Right-handed 310
Helix 143	AP8	C	967	972	Right-handed alpha
Helix 144	AP9	C	974	985	Right-handed alpha
Helix 145	AQ1	C	1028	1035	Right-handed alpha
Helix 146	AQ2	C	1049	1063	Right-handed alpha
Helix 147	AQ3	C	1075	1079	Right-handed 310
Helix 148	AQ4	C	1081	1083	Right-handed 310
Helix 149	AQ5	C	1084	1095	Right-handed alpha
Helix 150	AQ6	C	1104	1110	Right-handed alpha
Helix 151	AQ7	C	1125	1131	Right-handed alpha
Helix 152	AQ8	C	1133	1143	Right-handed alpha
Helix 153	AQ9	C	1143	1170	Right-handed alpha

There are 18 sheets in PDB entry 6CIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	445	451	anti-parallel
Strand 4	A	461	468	anti-parallel
Strand 5	A	415	421	anti-parallel
Strand 6	A	481	486	parallel
Strand 7	A	501	510	parallel
Strand 8	A	536	540	parallel
Strand 9	A	610	612	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	22	25	parallel
Strand 3	A	79	83	parallel
Strand 4	A	106	111	parallel
Strand 5	A	165	170	parallel
Strand 6	A	137	141	parallel
Strand 7	A	302	304	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	263	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	269	273	parallel
Strand 4	A	321	326	parallel
Strand 5	A	354	359	parallel
Strand 6	A	388	389	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	681	first strand
Strand 2	A	759	763	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	706	first strand
Strand 2	A	732	737	anti-parallel
Strand 3	A	721	722	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	862	first strand
Strand 2	A	829	833	parallel
Strand 3	A	960	966	parallel
Strand 4	A	989	994	parallel
Strand 5	A	1067	1072	parallel
Strand 6	A	1040	1044	parallel
Strand 7	A	1101	1103	anti-parallel
Strand 8	A	1115	1117	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	178	182	anti-parallel
Strand 3	B	445	451	anti-parallel
Strand 4	B	461	468	anti-parallel
Strand 5	B	415	421	anti-parallel
Strand 6	B	481	486	parallel
Strand 7	B	501	510	parallel
Strand 8	B	536	540	parallel
Strand 9	B	609	611	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	58	first strand
Strand 2	B	22	25	parallel
Strand 3	B	79	83	parallel
Strand 4	B	106	111	parallel
Strand 5	B	165	170	parallel
Strand 6	B	137	140	parallel
Strand 7	B	302	304	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	C	860	862	parallel
Strand 3	C	829	833	parallel
Strand 4	C	960	966	parallel
Strand 5	C	989	994	parallel
Strand 6	C	1067	1072	parallel
Strand 7	C	1040	1044	parallel
Strand 8	C	1101	1103	anti-parallel
Strand 9	C	1115	1117	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	263	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	269	274	parallel
Strand 4	B	321	326	parallel
Strand 5	B	354	359	parallel
Strand 6	B	388	389	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	662	first strand
Strand 2	C	213	214	anti-parallel
Strand 3	B	860	862	parallel
Strand 4	B	829	833	parallel
Strand 5	B	960	966	parallel
Strand 6	B	989	994	parallel
Strand 7	B	1067	1072	parallel
Strand 8	B	1040	1044	parallel
Strand 9	B	1101	1103	anti-parallel
Strand 10	B	1115	1117	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	681	first strand
Strand 2	B	759	763	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	706	first strand
Strand 2	B	732	737	anti-parallel
Strand 3	B	721	722	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	178	182	anti-parallel
Strand 3	C	445	451	anti-parallel
Strand 4	C	461	468	anti-parallel
Strand 5	C	414	421	anti-parallel
Strand 6	C	481	486	parallel
Strand 7	C	501	510	parallel
Strand 8	C	536	540	parallel
Strand 9	C	610	612	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	58	first strand
Strand 2	C	22	25	parallel
Strand 3	C	79	83	parallel
Strand 4	C	106	111	parallel
Strand 5	C	165	170	parallel
Strand 6	C	137	141	parallel
Strand 7	C	302	304	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	263	first strand
Strand 2	C	295	300	anti-parallel
Strand 3	C	269	273	parallel
Strand 4	C	321	326	parallel
Strand 5	C	354	360	parallel
Strand 6	C	388	390	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	681	first strand
Strand 2	C	759	763	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	706	first strand
Strand 2	C	732	737	anti-parallel
Strand 3	C	721	722	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CIQ