Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CJ7 entry

There is 1 chain in PDB entry 6CJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6CJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 5Right-handed 310
Helix 2
AA2
A
6 20Right-handed alpha
Helix 3
AA3
A
27 40Right-handed alpha
Helix 4
AA4
A
43 55Right-handed alpha
Helix 5
AA5
A
57 74Right-handed alpha
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
118 134Right-handed alpha
Helix 8
AA8
A
143 147Right-handed 310
Helix 9
AA9
A
170 174Right-handed 310
Helix 10
AB1
A
204 206Right-handed 310
Helix 11
AB2
A
216 218Right-handed 310
Helix 12
AB3
A
232 240Right-handed alpha
Helix 13
AB4
A
241 249Right-handed alpha
Helix 14
AB5
A
271 278Right-handed alpha
Helix 15
AB6
A
280 285Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6CJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
358 365anti-parallel
Strand 3
A
347 353anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
208 214anti-parallel
Strand 6
A
186 203anti-parallel
Strand 7
A
175 180anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
358 365anti-parallel
Strand 3
A
347 353anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
208 214anti-parallel
Strand 6
A
186 203anti-parallel
Strand 7
A
253 261anti-parallel
Strand 8
A
339 342parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
80 90parallel
Strand 3
A
153 162anti-parallel
Strand 4
A
305 314parallel
Strand 5
A
263 270anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
294 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il