Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CJB entry

There are 7 chains in PDB entry 6CJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 198
A
 TYR 200GLY 383
B
 LYS 3THR 198
B
 TYR 200GLY 383
C
 LYS 3THR 198
C
 TYR 200GLY 383
D
 LYS 3PRO 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6CJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
76 86Right-handed alpha
Helix 4
AA4
A
101 111Right-handed alpha
Helix 5
AA5
A
111 116Right-handed alpha
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
156 167Right-handed alpha
Helix 8
AA8
A
184 189Right-handed 310
Helix 9
AA9
A
217 232Right-handed alpha
Helix 10
AB1
A
236 248Right-handed alpha
Helix 11
AB2
A
249 269Right-handed alpha
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
309 320Right-handed alpha
Helix 14
AB5
A
348 356Right-handed alpha
Helix 15
AB6
A
370 383Right-handed alpha
Helix 16
AB7
B
5 13Right-handed alpha
Helix 17
AB8
B
52 66Right-handed alpha
Helix 18
AB9
B
76 86Right-handed alpha
Helix 19
AC1
B
101 111Right-handed alpha
Helix 20
AC2
B
111 117Right-handed alpha
Helix 21
AC3
B
127 135Right-handed 310
Helix 22
AC4
B
156 167Right-handed alpha
Helix 23
AC5
B
184 189Right-handed 310
Helix 24
AC6
B
217 232Right-handed alpha
Helix 25
AC7
B
236 248Right-handed alpha
Helix 26
AC8
B
249 269Right-handed alpha
Helix 27
AC9
B
287 295Right-handed alpha
Helix 28
AD1
B
309 320Right-handed alpha
Helix 29
AD2
B
348 356Right-handed alpha
Helix 30
AD3
B
370 383Right-handed alpha
Helix 31
AD4
C
5 13Right-handed alpha
Helix 32
AD5
C
52 66Right-handed alpha
Helix 33
AD6
C
76 86Right-handed alpha
Helix 34
AD7
C
101 111Right-handed alpha
Helix 35
AD8
C
111 117Right-handed alpha
Helix 36
AD9
C
128 135Right-handed alpha
Helix 37
AE1
C
156 167Right-handed alpha
Helix 38
AE2
C
184 189Right-handed 310
Helix 39
AE3
C
217 232Right-handed alpha
Helix 40
AE4
C
236 248Right-handed alpha
Helix 41
AE5
C
249 269Right-handed alpha
Helix 42
AE6
C
287 295Right-handed alpha
Helix 43
AE7
C
309 320Right-handed alpha
Helix 44
AE8
C
348 356Right-handed alpha
Helix 45
AE9
C
370 383Right-handed alpha
Helix 46
AF1
D
5 13Right-handed alpha
Helix 47
AF2
D
52 66Right-handed alpha
Helix 48
AF3
D
76 86Right-handed alpha
Helix 49
AF4
D
101 111Right-handed alpha
Helix 50
AF5
D
111 117Right-handed alpha
Helix 51
AF6
D
128 135Right-handed alpha
Helix 52
AF7
D
156 167Right-handed alpha
Helix 53
AF8
D
184 189Right-handed 310
Helix 54
AF9
D
217 232Right-handed alpha
Helix 55
AG1
D
236 248Right-handed alpha
Helix 56
AG2
D
249 269Right-handed alpha
Helix 57
AG3
D
287 295Right-handed alpha
Helix 58
AG4
D
309 320Right-handed alpha
Helix 59
AG5
D
348 356Right-handed alpha
Helix 60
AG6
D
370 382Right-handed alpha
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There are 8 sheets in PDB entry 6CJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
192 196anti-parallel
Strand 4
A
170 174parallel
Strand 5
A
139 145parallel
Strand 6
A
93 97parallel
Strand 7
A
119 123parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
335 337anti-parallel
Strand 5
A
324 325parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
192 196anti-parallel
Strand 4
B
170 174parallel
Strand 5
B
139 145parallel
Strand 6
B
93 97parallel
Strand 7
B
119 123parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 278first strand
Strand 2
B
301 306anti-parallel
Strand 3
B
361 365anti-parallel
Strand 4
B
335 337anti-parallel
Strand 5
B
324 325parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
210 214anti-parallel
Strand 3
C
192 196anti-parallel
Strand 4
C
170 174parallel
Strand 5
C
139 145parallel
Strand 6
C
93 97parallel
Strand 7
C
119 123parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 278first strand
Strand 2
C
301 306anti-parallel
Strand 3
C
361 365anti-parallel
Strand 4
C
335 337anti-parallel
Strand 5
C
324 325parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 74first strand
Strand 2
D
210 214anti-parallel
Strand 3
D
192 196anti-parallel
Strand 4
D
170 174parallel
Strand 5
D
139 145parallel
Strand 6
D
93 97parallel
Strand 7
D
119 123parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
274 278first strand
Strand 2
D
301 306anti-parallel
Strand 3
D
361 365anti-parallel
Strand 4
D
335 337anti-parallel
Strand 5
D
324 325parallel
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