Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CJF entry

There are 2 chains in PDB entry 6CJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33ALA 399
B
 ARG 36ALA 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6CJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 41Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
76 80Right-handed 310
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
138 140Right-handed 310
Helix 7
AA7
A
153 164Right-handed alpha
Helix 8
AA8
A
164 174Right-handed alpha
Helix 9
AA9
A
190 203Right-handed alpha
Helix 10
AB1
A
204 206Right-handed 310
Helix 11
AB2
A
227 243Right-handed alpha
Helix 12
AB3
A
261 276Right-handed alpha
Helix 13
AB4
A
309 324Right-handed alpha
Helix 14
AB5
A
338 349Right-handed alpha
Helix 15
AB6
A
356 363Right-handed alpha
Helix 16
AB7
A
365 381Right-handed alpha
Helix 17
AB8
A
385 390Right-handed alpha
Helix 18
AB9
A
391 399Right-handed alpha
Helix 19
AC1
B
37 41Right-handed alpha
Helix 20
AC2
B
41 50Right-handed alpha
Helix 21
AC3
B
51 66Right-handed alpha
Helix 22
AC4
B
76 80Right-handed 310
Helix 23
AC5
B
104 111Right-handed alpha
Helix 24
AC6
B
138 140Right-handed 310
Helix 25
AC7
B
153 164Right-handed alpha
Helix 26
AC8
B
164 174Right-handed alpha
Helix 27
AC9
B
190 203Right-handed alpha
Helix 28
AD1
B
204 206Right-handed 310
Helix 29
AD2
B
225 243Right-handed alpha
Helix 30
AD3
B
261 276Right-handed alpha
Helix 31
AD4
B
309 324Right-handed alpha
Helix 32
AD5
B
338 349Right-handed alpha
Helix 33
AD6
B
356 363Right-handed alpha
Helix 34
AD7
B
364 381Right-handed alpha
Helix 35
AD8
B
385 390Right-handed alpha
Helix 36
AD9
B
391 399Right-handed alpha
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There are 6 sheets in PDB entry 6CJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
86 88anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
115 121parallel
Strand 3
A
178 182parallel
Strand 4
A
208 212parallel
Strand 5
A
251 256parallel
Strand 6
A
279 282parallel
Strand 7
A
330 333parallel
Strand 8
A
352 355parallel
Strand 9
A
92 94parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
142 145anti-parallel
Strand 3
A
303 306anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
86 88anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
115 121parallel
Strand 3
B
178 182parallel
Strand 4
B
208 213parallel
Strand 5
B
251 256parallel
Strand 6
B
279 282parallel
Strand 7
B
330 333parallel
Strand 8
B
352 355parallel
Strand 9
B
92 94parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
142 145anti-parallel
Strand 3
B
303 306anti-parallel
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