Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CJQ entry

There are 4 chains in PDB entry 6CJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	ALA 415
B	THR 10	ALA 415
C	THR 10	ALA 415
D	THR 10	ALA 415

There are 76 helices in PDB entry 6CJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	35	Right-handed alpha
Helix 2	AA2	A	39	65	Right-handed alpha
Helix 3	AA3	A	82	88	Right-handed alpha
Helix 4	AA4	A	91	98	Right-handed alpha
Helix 5	AA5	A	103	104	Right-handed alpha
Helix 6	AA6	A	105	114	Right-handed 310
Helix 7	AA7	A	115	126	Right-handed alpha
Helix 8	AA8	A	132	158	Right-handed alpha
Helix 9	AA9	A	166	181	Right-handed alpha
Helix 10	AB1	A	194	224	Right-handed alpha
Helix 11	AB2	A	227	245	Right-handed alpha
Helix 12	AB3	A	250	267	Right-handed alpha
Helix 13	AB4	A	272	278	Right-handed alpha
Helix 14	AB5	A	281	292	Right-handed alpha
Helix 15	AB6	A	293	298	Right-handed alpha
Helix 16	AB7	A	307	316	Right-handed alpha
Helix 17	AB8	A	368	373	Right-handed alpha
Helix 18	AB9	A	394	403	Right-handed alpha
Helix 19	AC1	A	405	415	Right-handed alpha
Helix 20	AC2	B	10	35	Right-handed alpha
Helix 21	AC3	B	39	65	Right-handed alpha
Helix 22	AC4	B	82	88	Right-handed alpha
Helix 23	AC5	B	91	98	Right-handed alpha
Helix 24	AC6	B	103	104	Right-handed alpha
Helix 25	AC7	B	105	114	Right-handed 310
Helix 26	AC8	B	115	126	Right-handed alpha
Helix 27	AC9	B	132	158	Right-handed alpha
Helix 28	AD1	B	166	181	Right-handed alpha
Helix 29	AD2	B	194	224	Right-handed alpha
Helix 30	AD3	B	227	245	Right-handed alpha
Helix 31	AD4	B	250	267	Right-handed alpha
Helix 32	AD5	B	272	278	Right-handed alpha
Helix 33	AD6	B	281	292	Right-handed alpha
Helix 34	AD7	B	293	298	Right-handed alpha
Helix 35	AD8	B	307	316	Right-handed alpha
Helix 36	AD9	B	368	373	Right-handed alpha
Helix 37	AE1	B	394	403	Right-handed alpha
Helix 38	AE2	B	405	415	Right-handed alpha
Helix 39	AE3	C	10	35	Right-handed alpha
Helix 40	AE4	C	39	65	Right-handed alpha
Helix 41	AE5	C	82	88	Right-handed alpha
Helix 42	AE6	C	91	98	Right-handed alpha
Helix 43	AE7	C	103	104	Right-handed alpha
Helix 44	AE8	C	105	114	Right-handed 310
Helix 45	AE9	C	115	126	Right-handed alpha
Helix 46	AF1	C	132	158	Right-handed alpha
Helix 47	AF2	C	166	181	Right-handed alpha
Helix 48	AF3	C	194	224	Right-handed alpha
Helix 49	AF4	C	227	245	Right-handed alpha
Helix 50	AF5	C	250	267	Right-handed alpha
Helix 51	AF6	C	272	278	Right-handed alpha
Helix 52	AF7	C	281	292	Right-handed alpha
Helix 53	AF8	C	293	298	Right-handed alpha
Helix 54	AF9	C	307	316	Right-handed alpha
Helix 55	AG1	C	368	373	Right-handed alpha
Helix 56	AG2	C	394	403	Right-handed alpha
Helix 57	AG3	C	405	415	Right-handed alpha
Helix 58	AG4	D	10	35	Right-handed alpha
Helix 59	AG5	D	39	65	Right-handed alpha
Helix 60	AG6	D	82	88	Right-handed alpha
Helix 61	AG7	D	91	98	Right-handed alpha
Helix 62	AG8	D	103	104	Right-handed alpha
Helix 63	AG9	D	105	114	Right-handed 310
Helix 64	AH1	D	115	126	Right-handed alpha
Helix 65	AH2	D	132	158	Right-handed alpha
Helix 66	AH3	D	166	181	Right-handed alpha
Helix 67	AH4	D	194	224	Right-handed alpha
Helix 68	AH5	D	227	245	Right-handed alpha
Helix 69	AH6	D	250	267	Right-handed alpha
Helix 70	AH7	D	272	278	Right-handed alpha
Helix 71	AH8	D	281	292	Right-handed alpha
Helix 72	AH9	D	293	298	Right-handed alpha
Helix 73	AI1	D	307	316	Right-handed alpha
Helix 74	AI2	D	368	373	Right-handed alpha
Helix 75	AI3	D	394	403	Right-handed alpha
Helix 76	AI4	D	405	415	Right-handed alpha

There are 8 sheets in PDB entry 6CJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	338	343	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	345	349	anti-parallel
Strand 4	A	356	361	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	322	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	338	343	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	322	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	338	343	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	380	383	anti-parallel
Strand 3	C	345	349	anti-parallel
Strand 4	C	356	361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	322	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	D	338	343	anti-parallel
Strand 4	D	365	366	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	380	383	anti-parallel
Strand 3	D	345	349	anti-parallel
Strand 4	D	356	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJQ