Analysis of interatomic Contacts of Structural Units in PDB entry:
6CJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CJR entry

There are 2 chains in PDB entry 6CJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6LYS 218
B
 GLU 7LYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6CJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
31 55Right-handed alpha
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
103 113Right-handed alpha
Helix 6
AA6
A
116 124Right-handed 310
Helix 7
AA7
A
125 132Right-handed 310
Helix 8
AA8
A
182 188Right-handed 310
Helix 9
AA9
A
189 201Right-handed alpha
Helix 10
AB1
B
12 25Right-handed alpha
Helix 11
AB2
B
31 55Right-handed alpha
Helix 12
AB3
B
56 60Right-handed 310
Helix 13
AB4
B
88 96Right-handed alpha
Helix 14
AB5
B
103 114Right-handed alpha
Helix 15
AB6
B
116 124Right-handed 310
Helix 16
AB7
B
125 132Right-handed 310
Helix 17
AB8
B
182 188Right-handed 310
Helix 18
AB9
B
189 201Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6CJR.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
134 142anti-parallel
Strand 5
A
173 180anti-parallel
Strand 6
A
77 82anti-parallel
Strand 7
A
67 72anti-parallel
Strand 8
A
208 215parallel
Strand 9
B
208 215anti-parallel
Strand 10
B
67 72parallel
Strand 11
B
77 82anti-parallel
Strand 12
B
173 180anti-parallel
Strand 13
B
134 142anti-parallel
Strand 14
B
149 153anti-parallel
Strand 15
B
158 163anti-parallel
Strand 16
B
8 10anti-parallel
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