Analysis of interatomic Contacts of Structural Units in PDB entry:
6CK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CK0 entry

There are 2 chains in PDB entry 6CK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ARG 211
B
 ARG 2ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6CK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
73 75Right-handed 310
Helix 5
AA5
A
76 92Right-handed alpha
Helix 6
AA6
A
144 158Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
172 178Right-handed 310
Helix 9
AA9
B
14 25Right-handed alpha
Helix 10
AB1
B
45 47Right-handed 310
Helix 11
AB2
B
66 68Right-handed 310
Helix 12
AB3
B
73 75Right-handed 310
Helix 13
AB4
B
76 92Right-handed alpha
Helix 14
AB5
B
144 158Right-handed alpha
Helix 15
AB6
B
161 174Right-handed alpha
Helix 16
AB7
B
175 178Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6CK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 12first strand
Strand 2
A
32 39parallel
Strand 3
A
55 63anti-parallel
Strand 4
A
122 132anti-parallel
Strand 5
A
109 119anti-parallel
Strand 6
A
103 106anti-parallel
Strand 7
A
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
49 50anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
188 190anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
202 204anti-parallel
Strand 3
A
207 209anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 12first strand
Strand 2
B
32 39parallel
Strand 3
B
55 64anti-parallel
Strand 4
B
122 132anti-parallel
Strand 5
B
109 119anti-parallel
Strand 6
B
103 106anti-parallel
Strand 7
B
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
49 50anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
188 190anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
202 204anti-parallel
Strand 3
B
207 209anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il