Analysis of interatomic Contacts of Structural Units in PDB entry:
6CKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CKJ entry

There is 1 chain in PDB entry 6CKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6CKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 23Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
54 64Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
81 94Right-handed alpha
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
157 163Right-handed 310
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
183 190Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
A
212 224Right-handed alpha
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There are 3 sheets in PDB entry 6CKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
47 52parallel
Strand 3
A
4 10parallel
Strand 4
A
98 102parallel
Strand 5
A
172 182anti-parallel
Strand 6
A
130 135anti-parallel
Strand 7
A
198 201parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
151 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il