Analysis of interatomic Contacts of Structural Units in PDB entry:
6CKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CKY entry

There are 2 chains in PDB entry 6CKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 135
B
 MET 1SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6CKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
65 78Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
B
14 25Right-handed alpha
Helix 5
AA5
B
65 78Right-handed alpha
Helix 6
AA6
B
90 101Right-handed alpha
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There are 2 sheets in PDB entry 6CKY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 36first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
4 12parallel
Strand 5
B
82 87anti-parallel
Strand 6
B
127 131parallel
Strand 7
B
116 121anti-parallel
Strand 8
B
105 111anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
127 131anti-parallel
Strand 4
A
82 87parallel
Strand 5
B
4 12anti-parallel
Strand 6
B
53 58parallel
Strand 7
B
39 45anti-parallel
Strand 8
B
29 36anti-parallel
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