Analysis of interatomic Contacts of Structural Units in PDB entry:
6CL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CL5 entry

There are 2 chains in PDB entry 6CL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 328	TYR 701
B	ALA 328	ARG 634

There are 72 helices in PDB entry 6CL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	330	334	Right-handed 310
Helix 2	AA2	A	348	352	Right-handed 310
Helix 3	AA3	A	353	358	Right-handed 310
Helix 4	AA4	A	368	372	Right-handed 310
Helix 5	AA5	A	440	444	Right-handed 310
Helix 6	AA6	A	458	462	Right-handed 310
Helix 7	AA7	A	472	478	Right-handed alpha
Helix 8	AA8	A	534	538	Right-handed 310
Helix 9	AA9	A	540	544	Right-handed 310
Helix 10	AB1	A	574	578	Right-handed 310
Helix 11	AB2	A	584	593	Right-handed alpha
Helix 12	AB3	A	662	664	Right-handed 310
Helix 13	AB4	B	330	334	Right-handed 310
Helix 14	AB5	B	348	352	Right-handed 310
Helix 15	AB6	B	353	358	Right-handed 310
Helix 16	AB7	B	368	372	Right-handed 310
Helix 17	AB8	B	440	444	Right-handed 310
Helix 18	AB9	B	458	462	Right-handed 310
Helix 19	AC1	B	472	478	Right-handed alpha
Helix 20	AC2	B	534	538	Right-handed 310
Helix 21	AC3	B	540	544	Right-handed 310
Helix 22	AC4	B	574	578	Right-handed 310
Helix 23	AC5	B	584	593	Right-handed alpha
Helix 24	AC6	B	662	664	Right-handed 310
Helix 25	AC7	C	330	334	Right-handed 310
Helix 26	AC8	C	348	352	Right-handed 310
Helix 27	AC9	C	353	358	Right-handed 310
Helix 28	AD1	C	368	372	Right-handed 310
Helix 29	AD2	C	440	444	Right-handed 310
Helix 30	AD3	C	458	462	Right-handed 310
Helix 31	AD4	C	472	478	Right-handed alpha
Helix 32	AD5	C	534	538	Right-handed 310
Helix 33	AD6	C	540	544	Right-handed 310
Helix 34	AD7	C	574	578	Right-handed 310
Helix 35	AD8	C	584	593	Right-handed alpha
Helix 36	AD9	C	662	664	Right-handed 310
Helix 37	AE1	D	330	334	Right-handed 310
Helix 38	AE2	D	348	352	Right-handed 310
Helix 39	AE3	D	353	358	Right-handed 310
Helix 40	AE4	D	368	372	Right-handed 310
Helix 41	AE5	D	440	444	Right-handed 310
Helix 42	AE6	D	458	462	Right-handed 310
Helix 43	AE7	D	472	478	Right-handed alpha
Helix 44	AE8	D	534	538	Right-handed 310
Helix 45	AE9	D	540	544	Right-handed 310
Helix 46	AF1	D	574	578	Right-handed 310
Helix 47	AF2	D	584	593	Right-handed alpha
Helix 48	AF3	D	662	664	Right-handed 310
Helix 49	AF4	E	330	334	Right-handed 310
Helix 50	AF5	E	348	352	Right-handed 310
Helix 51	AF6	E	353	358	Right-handed 310
Helix 52	AF7	E	368	372	Right-handed 310
Helix 53	AF8	E	440	444	Right-handed 310
Helix 54	AF9	E	458	462	Right-handed 310
Helix 55	AG1	E	472	478	Right-handed alpha
Helix 56	AG2	E	534	538	Right-handed 310
Helix 57	AG3	E	540	544	Right-handed 310
Helix 58	AG4	E	574	578	Right-handed 310
Helix 59	AG5	E	584	593	Right-handed alpha
Helix 60	AG6	E	662	664	Right-handed 310
Helix 61	AG7	F	330	334	Right-handed 310
Helix 62	AG8	F	348	352	Right-handed 310
Helix 63	AG9	F	353	358	Right-handed 310
Helix 64	AH1	F	368	372	Right-handed 310
Helix 65	AH2	F	440	444	Right-handed 310
Helix 66	AH3	F	458	462	Right-handed 310
Helix 67	AH4	F	472	478	Right-handed alpha
Helix 68	AH5	F	534	538	Right-handed 310
Helix 69	AH6	F	540	544	Right-handed 310
Helix 70	AH7	F	574	578	Right-handed 310
Helix 71	AH8	F	584	593	Right-handed alpha
Helix 72	AH9	F	662	664	Right-handed 310

There are 42 sheets in PDB entry 6CL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	B	342	344	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	C	337	338	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	391	398	anti-parallel
Strand 3	A	404	411	anti-parallel
Strand 4	A	418	423	anti-parallel
Strand 5	A	437	438	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	466	470	parallel
Strand 3	A	488	496	anti-parallel
Strand 4	A	499	506	anti-parallel
Strand 5	A	511	517	anti-parallel
Strand 6	A	520	521	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	466	470	parallel
Strand 3	A	488	496	anti-parallel
Strand 4	A	499	506	anti-parallel
Strand 5	A	511	517	anti-parallel
Strand 6	A	525	526	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	B	568	570	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	570	first strand
Strand 2	C	563	564	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	606	610	anti-parallel
Strand 3	A	615	625	anti-parallel
Strand 4	A	691	700	anti-parallel
Strand 5	A	646	657	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	637	first strand
Strand 2	A	677	684	anti-parallel
Strand 3	A	666	673	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	C	342	344	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	391	398	anti-parallel
Strand 3	B	404	411	anti-parallel
Strand 4	B	418	423	anti-parallel
Strand 5	B	437	438	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	466	470	parallel
Strand 3	B	488	496	anti-parallel
Strand 4	B	499	506	anti-parallel
Strand 5	B	511	517	anti-parallel
Strand 6	B	520	521	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	466	470	parallel
Strand 3	B	488	496	anti-parallel
Strand 4	B	499	506	anti-parallel
Strand 5	B	511	517	anti-parallel
Strand 6	B	525	526	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	C	568	570	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	601	first strand
Strand 2	B	607	609	anti-parallel
Strand 3	B	616	625	anti-parallel
Strand 4	B	691	700	anti-parallel
Strand 5	B	646	657	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	637	first strand
Strand 2	B	677	684	anti-parallel
Strand 3	B	666	673	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	391	398	anti-parallel
Strand 3	C	404	411	anti-parallel
Strand 4	C	418	423	anti-parallel
Strand 5	C	437	438	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	470	first strand
Strand 2	C	488	496	anti-parallel
Strand 3	C	499	506	anti-parallel
Strand 4	C	511	517	anti-parallel
Strand 5	C	520	521	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	470	first strand
Strand 2	C	488	496	anti-parallel
Strand 3	C	499	506	anti-parallel
Strand 4	C	511	517	anti-parallel
Strand 5	C	525	526	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	601	first strand
Strand 2	C	607	609	anti-parallel
Strand 3	C	616	625	anti-parallel
Strand 4	C	691	701	anti-parallel
Strand 5	C	645	657	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	637	first strand
Strand 2	C	677	684	anti-parallel
Strand 3	C	666	673	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	E	342	344	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	F	337	338	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	391	398	anti-parallel
Strand 3	D	404	411	anti-parallel
Strand 4	D	418	423	anti-parallel
Strand 5	D	437	438	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	452	first strand
Strand 2	D	466	470	parallel
Strand 3	D	488	496	anti-parallel
Strand 4	D	499	506	anti-parallel
Strand 5	D	511	517	anti-parallel
Strand 6	D	520	521	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	452	first strand
Strand 2	D	466	470	parallel
Strand 3	D	488	496	anti-parallel
Strand 4	D	499	506	anti-parallel
Strand 5	D	511	517	anti-parallel
Strand 6	D	525	526	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	564	first strand
Strand 2	E	568	570	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	568	570	first strand
Strand 2	F	563	564	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	599	601	first strand
Strand 2	D	606	609	anti-parallel
Strand 3	D	616	625	anti-parallel
Strand 4	D	691	700	anti-parallel
Strand 5	D	646	657	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	637	first strand
Strand 2	D	677	684	anti-parallel
Strand 3	D	666	673	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	F	342	344	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	391	398	anti-parallel
Strand 3	E	404	411	anti-parallel
Strand 4	E	418	423	anti-parallel
Strand 5	E	437	438	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	466	470	parallel
Strand 3	E	488	496	anti-parallel
Strand 4	E	499	506	anti-parallel
Strand 5	E	511	517	anti-parallel
Strand 6	E	520	521	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	466	470	parallel
Strand 3	E	488	496	anti-parallel
Strand 4	E	499	506	anti-parallel
Strand 5	E	511	517	anti-parallel
Strand 6	E	525	526	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	563	564	first strand
Strand 2	F	568	570	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	599	601	first strand
Strand 2	E	607	610	anti-parallel
Strand 3	E	615	625	anti-parallel
Strand 4	E	691	700	anti-parallel
Strand 5	E	646	657	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	632	637	first strand
Strand 2	E	677	684	anti-parallel
Strand 3	E	666	673	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	379	first strand
Strand 2	F	391	398	anti-parallel
Strand 3	F	404	411	anti-parallel
Strand 4	F	418	423	anti-parallel
Strand 5	F	437	438	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	453	first strand
Strand 2	F	466	470	parallel
Strand 3	F	488	496	anti-parallel
Strand 4	F	499	506	anti-parallel
Strand 5	F	511	517	anti-parallel
Strand 6	F	520	521	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	453	first strand
Strand 2	F	466	470	parallel
Strand 3	F	488	496	anti-parallel
Strand 4	F	499	506	anti-parallel
Strand 5	F	511	517	anti-parallel
Strand 6	F	525	526	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	599	601	first strand
Strand 2	F	606	610	anti-parallel
Strand 3	F	615	625	anti-parallel
Strand 4	F	691	700	anti-parallel
Strand 5	F	646	657	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	632	637	first strand
Strand 2	F	677	684	anti-parallel
Strand 3	F	666	673	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CL5