Analysis of interatomic Contacts of Structural Units in PDB entry:
6CLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CLU entry

There are 4 chains in PDB entry 6CLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 260
B
 THR 2HIS 264
C
 THR 2ALA 262
D
 THR 2ARG 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6CLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
59 75Right-handed alpha
Helix 3
AA3
A
87 97Right-handed alpha
Helix 4
AA4
A
113 121Right-handed alpha
Helix 5
AA5
A
138 158Right-handed alpha
Helix 6
AA6
A
160 162Right-handed 310
Helix 7
AA7
A
175 185Right-handed alpha
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
203 210Right-handed alpha
Helix 10
AB1
A
216 218Right-handed 310
Helix 11
AB2
A
219 234Right-handed alpha
Helix 12
AB3
A
242 260Right-handed alpha
Helix 13
AB4
B
26 40Right-handed alpha
Helix 14
AB5
B
59 75Right-handed alpha
Helix 15
AB6
B
87 98Right-handed alpha
Helix 16
AB7
B
113 121Right-handed alpha
Helix 17
AB8
B
139 158Right-handed alpha
Helix 18
AB9
B
160 162Right-handed 310
Helix 19
AC1
B
176 185Right-handed alpha
Helix 20
AC2
B
185 191Right-handed alpha
Helix 21
AC3
B
222 234Right-handed alpha
Helix 22
AC4
B
242 263Right-handed alpha
Helix 23
AC5
C
26 40Right-handed alpha
Helix 24
AC6
C
59 75Right-handed alpha
Helix 25
AC7
C
87 98Right-handed alpha
Helix 26
AC8
C
112 121Right-handed alpha
Helix 27
AC9
C
138 158Right-handed alpha
Helix 28
AD1
C
160 162Right-handed 310
Helix 29
AD2
C
175 185Right-handed alpha
Helix 30
AD3
C
185 191Right-handed alpha
Helix 31
AD4
C
203 210Right-handed alpha
Helix 32
AD5
C
216 218Right-handed 310
Helix 33
AD6
C
219 234Right-handed alpha
Helix 34
AD7
C
242 262Right-handed alpha
Helix 35
AD8
D
25 40Right-handed alpha
Helix 36
AD9
D
61 75Right-handed alpha
Helix 37
AE1
D
87 98Right-handed alpha
Helix 38
AE2
D
113 121Right-handed alpha
Helix 39
AE3
D
138 158Right-handed alpha
Helix 40
AE4
D
160 162Right-handed 310
Helix 41
AE5
D
175 184Right-handed alpha
Helix 42
AE6
D
185 191Right-handed alpha
Helix 43
AE7
D
203 211Right-handed alpha
Helix 44
AE8
D
215 218Right-handed 310
Helix 45
AE9
D
219 234Right-handed alpha
Helix 46
AF1
D
242 263Right-handed alpha
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There are 4 sheets in PDB entry 6CLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
124 128parallel
Strand 3
A
101 104parallel
Strand 4
A
80 84parallel
Strand 5
A
43 46parallel
Strand 6
A
5 10parallel
Strand 7
A
237 240parallel
Strand 8
A
197 198parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
124 128parallel
Strand 3
B
101 104parallel
Strand 4
B
80 84parallel
Strand 5
B
43 46parallel
Strand 6
B
5 10parallel
Strand 7
B
237 240parallel
Strand 8
B
197 198parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 167first strand
Strand 2
C
124 128parallel
Strand 3
C
101 104parallel
Strand 4
C
80 84parallel
Strand 5
C
43 46parallel
Strand 6
C
5 10parallel
Strand 7
C
237 240parallel
Strand 8
C
197 198parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 167first strand
Strand 2
D
124 128parallel
Strand 3
D
101 104parallel
Strand 4
D
80 84parallel
Strand 5
D
43 46parallel
Strand 6
D
5 10parallel
Strand 7
D
237 240parallel
Strand 8
D
197 198parallel
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