Analysis of interatomic Contacts of Structural Units in PDB entry:
6CLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CLW entry

There are 2 chains in PDB entry 6CLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 339
B
 MET 1SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6CLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
29 34Right-handed alpha
Helix 4
AA4
A
41 48Right-handed alpha
Helix 5
AA5
A
51 65Right-handed alpha
Helix 6
AA6
A
79 85Right-handed alpha
Helix 7
AA7
A
93 98Right-handed alpha
Helix 8
AA8
A
101 107Right-handed alpha
Helix 9
AA9
A
108 111Right-handed 310
Helix 10
AB1
A
112 120Right-handed alpha
Helix 11
AB2
A
123 129Right-handed alpha
Helix 12
AB3
A
131 139Right-handed alpha
Helix 13
AB4
A
139 165Right-handed alpha
Helix 14
AB5
A
181 191Right-handed alpha
Helix 15
AB6
A
201 213Right-handed alpha
Helix 16
AB7
A
215 220Right-handed alpha
Helix 17
AB8
A
244 248Right-handed 310
Helix 18
AB9
A
249 265Right-handed alpha
Helix 19
AC1
A
283 299Right-handed alpha
Helix 20
AC2
A
306 316Right-handed alpha
Helix 21
AC3
B
2 14Right-handed alpha
Helix 22
AC4
B
16 29Right-handed alpha
Helix 23
AC5
B
29 34Right-handed alpha
Helix 24
AC6
B
41 49Right-handed alpha
Helix 25
AC7
B
51 65Right-handed alpha
Helix 26
AC8
B
79 85Right-handed alpha
Helix 27
AC9
B
93 98Right-handed alpha
Helix 28
AD1
B
101 107Right-handed alpha
Helix 29
AD2
B
108 111Right-handed 310
Helix 30
AD3
B
112 120Right-handed alpha
Helix 31
AD4
B
123 129Right-handed alpha
Helix 32
AD5
B
131 138Right-handed alpha
Helix 33
AD6
B
139 165Right-handed alpha
Helix 34
AD7
B
181 191Right-handed alpha
Helix 35
AD8
B
201 213Right-handed alpha
Helix 36
AD9
B
217 219Right-handed 310
Helix 37
AE1
B
244 248Right-handed 310
Helix 38
AE2
B
249 265Right-handed alpha
Helix 39
AE3
B
285 299Right-handed alpha
Helix 40
AE4
B
306 317Right-handed alpha
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There are 4 sheets in PDB entry 6CLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
75 76anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
195 200parallel
Strand 3
A
172 176parallel
Strand 4
A
238 242parallel
Strand 5
A
269 274parallel
Strand 6
A
332 338anti-parallel
Strand 7
A
319 326anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
75 76anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 224first strand
Strand 2
B
195 199parallel
Strand 3
B
172 176parallel
Strand 4
B
238 242parallel
Strand 5
B
269 274parallel
Strand 6
B
332 338anti-parallel
Strand 7
B
319 326anti-parallel
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