Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CMC entry

There is 1 chain in PDB entry 6CMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 42TYR 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6CMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 47Right-handed alpha
Helix 2
AA2
A
48 70Right-handed alpha
Helix 3
AA3
A
105 113Right-handed alpha
Helix 4
AA4
A
134 143Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
165 169Right-handed alpha
Helix 7
AA7
A
181 183Right-handed 310
Helix 8
AA8
A
214 217Right-handed 310
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
A
258 263Right-handed alpha
Helix 11
AB2
A
305 323Right-handed alpha
Helix 12
AB3
A
337 344Right-handed alpha
Helix 13
AB4
A
344 355Right-handed alpha
Helix 14
AB5
A
382 393Right-handed alpha
Helix 15
AB6
A
396 403Right-handed alpha
Helix 16
AB7
A
426 442Right-handed alpha
Helix 17
AB8
A
445 453Right-handed alpha
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There are 4 sheets in PDB entry 6CMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
404 423anti-parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
170 175anti-parallel
Strand 5
A
178 179anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
404 423anti-parallel
Strand 3
A
270 282parallel
Strand 4
A
367 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
209 210anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
246 251anti-parallel
Strand 5
A
264 266anti-parallel
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