Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CMI entry

There are 3 chains in PDB entry 6CMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
GLN 176GLU 603
C
GLU 1GLU 213
D
GLU 1LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CMI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
204 207Right-handed 310
Helix 2
AA2
B
275 277Right-handed 310
Helix 3
AA3
B
373 375Right-handed 310
Helix 4
AA4
B
378 382Right-handed 310
Helix 5
AA5
B
393 398Right-handed alpha
Helix 6
AA6
B
419 421Right-handed 310
Helix 7
AA7
C
30 32Right-handed 310
Helix 8
AA8
C
80 84Right-handed 310
Helix 9
AA9
C
121 126Right-handed alpha
Helix 10
AB1
C
183 188Right-handed alpha
Helix 11
AB2
D
62 65Right-handed 310
Helix 12
AB3
D
87 91Right-handed 310
Helix 13
AB4
D
175 177Right-handed 310
Helix 14
AB5
D
206 211Right-handed alpha
Helix 15
AB6
D
220 223Right-handed 310
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There are 19 sheets in PDB entry 6CMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 180first strand
Strand 2
B
558 568anti-parallel
Strand 3
B
571 582anti-parallel
Strand 4
B
587 596anti-parallel
Strand 5
B
201 202anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 225first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
244 257anti-parallel
Strand 4
B
263 271anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 287first strand
Strand 2
B
290 297anti-parallel
Strand 3
B
314 320anti-parallel
Strand 4
B
332 336anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
339 341first strand
Strand 2
B
425 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
347 350anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
339 341first strand
Strand 2
B
425 430parallel
Strand 3
B
407 417anti-parallel
Strand 4
B
361 371anti-parallel
Strand 5
B
356 358anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
442 447first strand
Strand 2
B
450 455anti-parallel
Strand 3
B
465 471anti-parallel
Strand 4
B
476 479anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
511 515first strand
Strand 2
B
520 526anti-parallel
Strand 3
B
535 540anti-parallel
Strand 4
B
545 550anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
63 68anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 13first strand
Strand 2
C
105 106parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
46 50anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
86 91anti-parallel
Strand 5
C
97 98anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
46 50anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
86 91anti-parallel
Strand 5
C
102 103anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 118first strand
Strand 2
C
129 139anti-parallel
Strand 3
C
173 182anti-parallel
Strand 4
C
159 163anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
153 154first strand
Strand 2
C
144 150anti-parallel
Strand 3
C
191 198anti-parallel
Strand 4
C
205 210anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
5 6first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
126 130parallel
Strand 3
D
92 105anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
126 130parallel
Strand 3
D
92 105anti-parallel
Strand 4
D
112 122anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
139 143first strand
Strand 2
D
154 164anti-parallel
Strand 3
D
195 204anti-parallel
Strand 4
D
182 184anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
139 143first strand
Strand 2
D
154 164anti-parallel
Strand 3
D
195 204anti-parallel
Strand 4
D
188 189anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
170 173first strand
Strand 2
D
214 219anti-parallel
Strand 3
D
224 229anti-parallel
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