Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CMJ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 6CMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 161LEU 344
A
 ASN 346HIS 399
A
 LYS 401CYS 461
A
 LEU 463LEU 463
B
 GLN 161LEU 344
B
 ASN 346HIS 399
B
 LYS 401CYS 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6CMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 206Right-handed alpha
Helix 2
AA2
A
228 243Right-handed alpha
Helix 3
AA3
A
285 306Right-handed alpha
Helix 4
AA4
A
314 316Right-handed 310
Helix 5
AA5
A
350 354Right-handed 310
Helix 6
AA6
A
355 360Right-handed alpha
Helix 7
AA7
A
368 386Right-handed alpha
Helix 8
AA8
A
394 405Right-handed alpha
Helix 9
AA9
A
416 427Right-handed alpha
Helix 10
AB1
A
436 441Right-handed alpha
Helix 11
AB2
A
443 448Right-handed alpha
Helix 12
AB3
A
456 462Right-handed alpha
Helix 13
AB4
B
198 206Right-handed alpha
Helix 14
AB5
B
228 243Right-handed alpha
Helix 15
AB6
B
285 306Right-handed alpha
Helix 16
AB7
B
314 316Right-handed 310
Helix 17
AB8
B
350 354Right-handed 310
Helix 18
AB9
B
355 360Right-handed alpha
Helix 19
AC1
B
368 386Right-handed alpha
Helix 20
AC2
B
394 405Right-handed alpha
Helix 21
AC3
B
416 427Right-handed alpha
Helix 22
AC4
B
436 441Right-handed alpha
Helix 23
AC5
B
443 448Right-handed alpha
Helix 24
AC6
B
456 462Right-handed alpha
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There are 8 sheets in PDB entry 6CMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
178 184anti-parallel
Strand 3
A
189 197anti-parallel
Strand 4
A
262 268anti-parallel
Strand 5
A
251 255anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
318 320anti-parallel
Strand 3
A
326 328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
335 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
366 367anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 172first strand
Strand 2
B
178 184anti-parallel
Strand 3
B
189 197anti-parallel
Strand 4
B
262 268anti-parallel
Strand 5
B
251 256anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
318 320anti-parallel
Strand 3
B
326 328anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
335 336anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
366 367anti-parallel
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