Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CMQ entry

There are 2 chains in PDB entry 6CMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 106	ARG 528
B	PRO 107	TYR 375

There are 46 helices in PDB entry 6CMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	130	Right-handed alpha
Helix 2	AA2	A	189	200	Right-handed alpha
Helix 3	AA3	A	225	234	Right-handed alpha
Helix 4	AA4	A	246	258	Right-handed alpha
Helix 5	AA5	A	265	270	Right-handed alpha
Helix 6	AA6	A	271	277	Right-handed 310
Helix 7	AA7	A	337	349	Right-handed alpha
Helix 8	AA8	A	431	449	Right-handed alpha
Helix 9	AA9	A	463	483	Right-handed alpha
Helix 10	AB1	A	490	499	Right-handed alpha
Helix 11	AB2	A	507	527	Right-handed alpha
Helix 12	AB3	B	118	129	Right-handed alpha
Helix 13	AB4	B	189	200	Right-handed alpha
Helix 14	AB5	B	225	235	Right-handed alpha
Helix 15	AB6	B	245	257	Right-handed alpha
Helix 16	AB7	B	258	262	Right-handed 310
Helix 17	AB8	B	266	277	Right-handed 310
Helix 18	AB9	B	334	336	Right-handed 310
Helix 19	AC1	B	337	348	Right-handed alpha
Helix 20	AC2	B	432	448	Right-handed alpha
Helix 21	AC3	B	464	483	Right-handed alpha
Helix 22	AC4	B	490	499	Right-handed alpha
Helix 23	AC5	B	507	526	Right-handed alpha
Helix 24	AC6	C	118	129	Right-handed alpha
Helix 25	AC7	C	189	200	Right-handed alpha
Helix 26	AC8	C	225	234	Right-handed alpha
Helix 27	AC9	C	247	258	Right-handed alpha
Helix 28	AD1	C	259	261	Right-handed 310
Helix 29	AD2	C	266	277	Right-handed 310
Helix 30	AD3	C	334	336	Right-handed 310
Helix 31	AD4	C	337	348	Right-handed alpha
Helix 32	AD5	C	432	448	Right-handed alpha
Helix 33	AD6	C	463	483	Right-handed alpha
Helix 34	AD7	C	489	499	Right-handed alpha
Helix 35	AD8	C	507	526	Right-handed alpha
Helix 36	AD9	D	118	130	Right-handed alpha
Helix 37	AE1	D	189	200	Right-handed alpha
Helix 38	AE2	D	225	234	Right-handed alpha
Helix 39	AE3	D	245	257	Right-handed alpha
Helix 40	AE4	D	270	277	Right-handed 310
Helix 41	AE5	D	334	336	Right-handed 310
Helix 42	AE6	D	337	349	Right-handed alpha
Helix 43	AE7	D	431	449	Right-handed alpha
Helix 44	AE8	D	463	483	Right-handed alpha
Helix 45	AE9	D	490	499	Right-handed alpha
Helix 46	AF1	D	507	526	Right-handed alpha

There are 18 sheets in PDB entry 6CMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	147	152	anti-parallel
Strand 3	A	167	174	anti-parallel
Strand 4	A	179	180	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	487	489	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	244	245	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	A	304	310	anti-parallel
Strand 3	A	327	330	anti-parallel
Strand 4	A	455	458	parallel
Strand 5	A	352	355	parallel
Strand 6	A	413	420	parallel
Strand 7	A	396	405	anti-parallel
Strand 8	A	383	392	anti-parallel
Strand 9	A	377	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	364	365	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	179	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	D	202	203	parallel
Strand 4	D	209	210	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	487	489	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	327	330	anti-parallel
Strand 3	B	455	458	parallel
Strand 4	B	352	355	parallel
Strand 5	B	408	420	parallel
Strand 6	B	396	405	anti-parallel
Strand 7	B	383	392	anti-parallel
Strand 8	B	376	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	364	365	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	169	172	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	487	488	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	310	first strand
Strand 2	C	327	330	anti-parallel
Strand 3	C	455	458	parallel
Strand 4	C	352	355	parallel
Strand 5	C	413	420	parallel
Strand 6	C	396	405	anti-parallel
Strand 7	C	383	392	anti-parallel
Strand 8	C	377	380	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	364	365	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	135	139	parallel
Strand 3	D	147	152	anti-parallel
Strand 4	D	167	172	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	487	489	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	291	first strand
Strand 2	D	304	310	anti-parallel
Strand 3	D	327	330	anti-parallel
Strand 4	D	455	458	parallel
Strand 5	D	352	355	parallel
Strand 6	D	408	420	parallel
Strand 7	D	396	405	anti-parallel
Strand 8	D	383	392	anti-parallel
Strand 9	D	377	380	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	364	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMQ