Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CMS entry

There is 1 chain in PDB entry 6CMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
73 83Right-handed alpha
Helix 3
AA3
A
118 129Right-handed alpha
Helix 4
AA4
A
189 200Right-handed alpha
Helix 5
AA5
A
225 235Right-handed alpha
Helix 6
AA6
A
245 257Right-handed alpha
Helix 7
AA7
A
258 261Right-handed 310
Helix 8
AA8
A
265 270Right-handed alpha
Helix 9
AA9
A
273 277Right-handed 310
Helix 10
AB1
A
285 287Right-handed 310
Helix 11
AB2
A
337 348Right-handed alpha
Helix 12
AB3
A
432 449Right-handed alpha
Helix 13
AB4
A
463 483Right-handed alpha
Helix 14
AB5
A
489 499Right-handed alpha
Helix 15
AB6
A
507 527Right-handed alpha
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There are 8 sheets in PDB entry 6CMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
63 65anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
41 47anti-parallel
Strand 5
A
28 33anti-parallel
Strand 6
A
100 101parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
95 96anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
134 139parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
166 175anti-parallel
Strand 5
A
178 180anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
134 139parallel
Strand 3
A
214 215parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
487 488anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
327 330anti-parallel
Strand 4
A
455 458parallel
Strand 5
A
352 355parallel
Strand 6
A
408 420parallel
Strand 7
A
396 405anti-parallel
Strand 8
A
383 392anti-parallel
Strand 9
A
377 380anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
364 365anti-parallel
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