Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CMZ entry

There are 3 chains in PDB entry 6CMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	VAL 463
B	LYS 2	ALA 460
C	LYS 2	GLY 429

There are 66 helices in PDB entry 6CMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	40	46	Right-handed alpha
Helix 3	AA3	A	47	65	Right-handed alpha
Helix 4	AA4	A	70	73	Right-handed 310
Helix 5	AA5	A	83	109	Right-handed alpha
Helix 6	AA6	A	164	169	Right-handed alpha
Helix 7	AA7	A	184	197	Right-handed alpha
Helix 8	AA8	A	215	230	Right-handed alpha
Helix 9	AA9	A	279	283	Right-handed 310
Helix 10	AB1	A	309	313	Right-handed 310
Helix 11	AB2	A	317	334	Right-handed alpha
Helix 12	AB3	A	360	367	Right-handed alpha
Helix 13	AB4	A	381	387	Right-handed alpha
Helix 14	AB5	A	417	429	Right-handed alpha
Helix 15	AB6	A	431	437	Right-handed alpha
Helix 16	AB7	A	446	461	Right-handed alpha
Helix 17	AB8	B	14	27	Right-handed alpha
Helix 18	AB9	B	40	46	Right-handed alpha
Helix 19	AC1	B	47	65	Right-handed alpha
Helix 20	AC2	B	70	73	Right-handed 310
Helix 21	AC3	B	83	109	Right-handed alpha
Helix 22	AC4	B	164	169	Right-handed alpha
Helix 23	AC5	B	184	197	Right-handed alpha
Helix 24	AC6	B	215	230	Right-handed alpha
Helix 25	AC7	B	279	284	Right-handed 310
Helix 26	AC8	B	309	313	Right-handed 310
Helix 27	AC9	B	317	333	Right-handed alpha
Helix 28	AD1	B	360	367	Right-handed alpha
Helix 29	AD2	B	381	387	Right-handed alpha
Helix 30	AD3	B	415	417	Right-handed 310
Helix 31	AD4	B	418	429	Right-handed alpha
Helix 32	AD5	B	431	437	Right-handed alpha
Helix 33	AD6	B	446	459	Right-handed alpha
Helix 34	AD7	C	14	27	Right-handed alpha
Helix 35	AD8	C	40	46	Right-handed alpha
Helix 36	AD9	C	47	65	Right-handed alpha
Helix 37	AE1	C	70	73	Right-handed 310
Helix 38	AE2	C	83	109	Right-handed alpha
Helix 39	AE3	C	164	169	Right-handed alpha
Helix 40	AE4	C	184	197	Right-handed alpha
Helix 41	AE5	C	215	230	Right-handed alpha
Helix 42	AE6	C	279	283	Right-handed 310
Helix 43	AE7	C	309	313	Right-handed 310
Helix 44	AE8	C	317	333	Right-handed alpha
Helix 45	AE9	C	360	367	Right-handed alpha
Helix 46	AF1	C	381	387	Right-handed alpha
Helix 47	AF2	C	415	417	Right-handed 310
Helix 48	AF3	C	418	429	Right-handed alpha
Helix 49	AF4	C	431	438	Right-handed alpha
Helix 50	AF5	C	446	462	Right-handed alpha
Helix 51	AF6	D	14	27	Right-handed alpha
Helix 52	AF7	D	40	47	Right-handed alpha
Helix 53	AF8	D	47	66	Right-handed alpha
Helix 54	AF9	D	70	73	Right-handed 310
Helix 55	AG1	D	83	109	Right-handed alpha
Helix 56	AG2	D	164	169	Right-handed alpha
Helix 57	AG3	D	184	197	Right-handed alpha
Helix 58	AG4	D	215	230	Right-handed alpha
Helix 59	AG5	D	279	283	Right-handed 310
Helix 60	AG6	D	309	313	Right-handed 310
Helix 61	AG7	D	317	333	Right-handed alpha
Helix 62	AG8	D	360	367	Right-handed alpha
Helix 63	AG9	D	381	387	Right-handed alpha
Helix 64	AH1	D	417	428	Right-handed alpha
Helix 65	AH2	D	431	437	Right-handed alpha
Helix 66	AH3	D	446	460	Right-handed alpha

There are 32 sheets in PDB entry 6CMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	133	138	parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	117	122	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	31	35	parallel
Strand 3	A	8	11	parallel
Strand 4	A	141	144	parallel
Strand 5	A	305	307	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	B	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	271	273	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	265	267	parallel
Strand 3	A	177	181	parallel
Strand 4	A	200	205	parallel
Strand 5	A	232	235	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	242	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	257	260	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	291	292	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	405	412	anti-parallel
Strand 4	A	393	399	anti-parallel
Strand 5	A	371	377	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	134	138	parallel
Strand 3	B	125	129	anti-parallel
Strand 4	B	117	122	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	31	35	parallel
Strand 3	B	8	11	parallel
Strand 4	B	141	144	parallel
Strand 5	B	305	307	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	271	273	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	265	267	parallel
Strand 3	B	177	181	parallel
Strand 4	B	200	205	parallel
Strand 5	B	232	235	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	242	first strand
Strand 2	B	248	252	anti-parallel
Strand 3	B	257	260	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	291	292	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	405	412	anti-parallel
Strand 4	B	393	399	anti-parallel
Strand 5	B	371	377	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	133	138	parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	117	122	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	31	35	parallel
Strand 3	C	8	11	parallel
Strand 4	C	141	144	parallel
Strand 5	C	305	307	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	D	75	76	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	271	273	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	265	267	parallel
Strand 3	C	177	181	parallel
Strand 4	C	200	205	parallel
Strand 5	C	232	235	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	248	251	anti-parallel
Strand 3	C	257	260	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	291	292	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	405	412	anti-parallel
Strand 4	C	393	399	anti-parallel
Strand 5	C	371	377	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	134	138	parallel
Strand 3	D	125	129	anti-parallel
Strand 4	D	117	122	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	31	35	parallel
Strand 3	D	8	11	parallel
Strand 4	D	141	144	parallel
Strand 5	D	305	307	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	271	273	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	265	267	parallel
Strand 3	D	177	181	parallel
Strand 4	D	200	205	parallel
Strand 5	D	232	235	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	248	251	anti-parallel
Strand 3	D	257	260	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	291	292	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	353	358	anti-parallel
Strand 3	D	405	412	anti-parallel
Strand 4	D	393	399	anti-parallel
Strand 5	D	371	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMZ