Analysis of interatomic Contacts of Structural Units in PDB entry:
6CNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CNI entry

There are 2 chains in PDB entry 6CNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 88SER 289
B
 SER 88SER 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6CNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 118Right-handed 310
Helix 2
AA2
A
121 138Right-handed alpha
Helix 3
AA3
A
150 163Right-handed alpha
Helix 4
AA4
A
173 176Right-handed 310
Helix 5
AA5
A
194 212Right-handed alpha
Helix 6
AA6
A
230 242Right-handed alpha
Helix 7
AA7
A
245 252Right-handed 310
Helix 8
AA8
A
282 286Right-handed 310
Helix 9
AA9
B
114 118Right-handed 310
Helix 10
AB1
B
121 138Right-handed alpha
Helix 11
AB2
B
150 163Right-handed alpha
Helix 12
AB3
B
173 176Right-handed 310
Helix 13
AB4
B
194 212Right-handed alpha
Helix 14
AB5
B
230 242Right-handed alpha
Helix 15
AB6
B
245 252Right-handed 310
Helix 16
AB7
B
282 286Right-handed 310
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There are 2 sheets in PDB entry 6CNI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
144 148parallel
Strand 3
A
223 229parallel
Strand 4
A
98 104parallel
Strand 5
A
259 264anti-parallel
Strand 6
A
270 277anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
144 148parallel
Strand 3
B
223 229parallel
Strand 4
B
98 104parallel
Strand 5
B
259 264anti-parallel
Strand 6
B
270 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il