Analysis of interatomic Contacts of Structural Units in PDB entry:
6CNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CNL entry

There are 24 chains in PDB entry 6CNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 94	SER 289
C	ALA 94	SER 289
L	LYS 95	SER 289
J	ALA 94	SER 289
F	ASP 90	SER 289
H	ALA 94	SER 289
K	ALA 94	SER 289
D	HIS 91	SER 289
B	LYS 93	SER 289
I	ALA 94	SER 289
G	LYS 93	SER 289
E	HIS 91	SER 289
M	GLY 56	GLU 66
O	GLY 56	GLU 66
X	GLY 56	ARG 65
V	GLY 56	GLU 66
R	GLY 56	GLU 66
T	GLY 56	GLU 66
W	GLY 56	GLU 66
P	GLY 56	GLU 66
N	GLY 56	GLU 66
U	GLY 56	GLU 66
S	GLY 56	GLU 66
Q	VAL 57	GLU 66

There are 73 helices in PDB entry 6CNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	138	Right-handed alpha
Helix 2	AA2	A	150	164	Right-handed alpha
Helix 3	AA3	A	193	212	Right-handed alpha
Helix 4	AA4	A	230	242	Right-handed alpha
Helix 5	AA5	A	245	252	Right-handed 310
Helix 6	AA6	A	282	286	Right-handed 310
Helix 7	AA7	C	121	138	Right-handed alpha
Helix 8	AA8	C	150	164	Right-handed alpha
Helix 9	AA9	C	193	212	Right-handed alpha
Helix 10	AB1	C	230	242	Right-handed alpha
Helix 11	AB2	C	245	252	Right-handed 310
Helix 12	AB3	C	282	286	Right-handed 310
Helix 13	AB4	L	114	118	Right-handed 310
Helix 14	AB5	L	121	138	Right-handed alpha
Helix 15	AB6	L	150	164	Right-handed alpha
Helix 16	AB7	L	193	212	Right-handed alpha
Helix 17	AB8	L	230	242	Right-handed alpha
Helix 18	AB9	L	245	252	Right-handed 310
Helix 19	AC1	L	282	286	Right-handed 310
Helix 20	AC2	J	121	138	Right-handed alpha
Helix 21	AC3	J	150	164	Right-handed alpha
Helix 22	AC4	J	193	212	Right-handed alpha
Helix 23	AC5	J	230	242	Right-handed alpha
Helix 24	AC6	J	245	252	Right-handed 310
Helix 25	AC7	J	282	286	Right-handed 310
Helix 26	AC8	F	121	138	Right-handed alpha
Helix 27	AC9	F	150	164	Right-handed alpha
Helix 28	AD1	F	193	212	Right-handed alpha
Helix 29	AD2	F	230	242	Right-handed alpha
Helix 30	AD3	F	245	252	Right-handed 310
Helix 31	AD4	F	282	286	Right-handed 310
Helix 32	AD5	H	121	138	Right-handed alpha
Helix 33	AD6	H	150	164	Right-handed alpha
Helix 34	AD7	H	193	212	Right-handed alpha
Helix 35	AD8	H	230	242	Right-handed alpha
Helix 36	AD9	H	245	252	Right-handed 310
Helix 37	AE1	H	282	286	Right-handed 310
Helix 38	AE2	K	121	138	Right-handed alpha
Helix 39	AE3	K	150	164	Right-handed alpha
Helix 40	AE4	K	193	212	Right-handed alpha
Helix 41	AE5	K	230	242	Right-handed alpha
Helix 42	AE6	K	245	252	Right-handed 310
Helix 43	AE7	K	282	286	Right-handed 310
Helix 44	AE8	D	121	138	Right-handed alpha
Helix 45	AE9	D	150	163	Right-handed alpha
Helix 46	AF1	D	193	212	Right-handed alpha
Helix 47	AF2	D	230	242	Right-handed alpha
Helix 48	AF3	D	245	252	Right-handed 310
Helix 49	AF4	D	282	286	Right-handed 310
Helix 50	AF5	B	121	138	Right-handed alpha
Helix 51	AF6	B	150	163	Right-handed alpha
Helix 52	AF7	B	193	212	Right-handed alpha
Helix 53	AF8	B	230	242	Right-handed alpha
Helix 54	AF9	B	245	252	Right-handed 310
Helix 55	AG1	B	282	286	Right-handed 310
Helix 56	AG2	I	121	138	Right-handed alpha
Helix 57	AG3	I	150	164	Right-handed alpha
Helix 58	AG4	I	193	212	Right-handed alpha
Helix 59	AG5	I	230	242	Right-handed alpha
Helix 60	AG6	I	245	252	Right-handed 310
Helix 61	AG7	I	282	286	Right-handed 310
Helix 62	AG8	G	121	138	Right-handed alpha
Helix 63	AG9	G	150	164	Right-handed alpha
Helix 64	AH1	G	193	212	Right-handed alpha
Helix 65	AH2	G	230	242	Right-handed alpha
Helix 66	AH3	G	245	252	Right-handed 310
Helix 67	AH4	G	282	286	Right-handed 310
Helix 68	AH5	E	121	138	Right-handed alpha
Helix 69	AH6	E	150	162	Right-handed alpha
Helix 70	AH7	E	193	212	Right-handed alpha
Helix 71	AH8	E	230	242	Right-handed alpha
Helix 72	AH9	E	245	252	Right-handed 310
Helix 73	AI1	E	282	286	Right-handed 310

There are 12 sheets in PDB entry 6CNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	144	148	parallel
Strand 3	A	223	229	parallel
Strand 4	A	98	104	parallel
Strand 5	A	259	264	anti-parallel
Strand 6	A	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	144	148	parallel
Strand 3	C	223	229	parallel
Strand 4	C	98	104	parallel
Strand 5	C	259	264	anti-parallel
Strand 6	C	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	168	172	first strand
Strand 2	L	144	148	parallel
Strand 3	L	223	229	parallel
Strand 4	L	98	104	parallel
Strand 5	L	259	264	anti-parallel
Strand 6	L	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	168	172	first strand
Strand 2	J	144	148	parallel
Strand 3	J	223	229	parallel
Strand 4	J	98	104	parallel
Strand 5	J	259	264	anti-parallel
Strand 6	J	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	172	first strand
Strand 2	F	144	148	parallel
Strand 3	F	223	229	parallel
Strand 4	F	98	104	parallel
Strand 5	F	259	264	anti-parallel
Strand 6	F	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	172	first strand
Strand 2	H	144	148	parallel
Strand 3	H	223	229	parallel
Strand 4	H	98	104	parallel
Strand 5	H	259	264	anti-parallel
Strand 6	H	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	168	172	first strand
Strand 2	K	144	148	parallel
Strand 3	K	223	229	parallel
Strand 4	K	98	104	parallel
Strand 5	K	259	264	anti-parallel
Strand 6	K	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	144	148	parallel
Strand 3	D	223	229	parallel
Strand 4	D	98	104	parallel
Strand 5	D	259	264	anti-parallel
Strand 6	D	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	144	148	parallel
Strand 3	B	223	229	parallel
Strand 4	B	98	104	parallel
Strand 5	B	259	264	anti-parallel
Strand 6	B	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	168	172	first strand
Strand 2	I	144	148	parallel
Strand 3	I	223	229	parallel
Strand 4	I	98	104	parallel
Strand 5	I	259	264	anti-parallel
Strand 6	I	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	172	first strand
Strand 2	G	144	148	parallel
Strand 3	G	223	229	parallel
Strand 4	G	98	104	parallel
Strand 5	G	259	264	anti-parallel
Strand 6	G	270	277	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	144	148	parallel
Strand 3	E	223	229	parallel
Strand 4	E	98	104	parallel
Strand 5	E	259	264	anti-parallel
Strand 6	E	270	277	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CNL