Analysis of interatomic Contacts of Structural Units in PDB entry:
6CNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CNM entry

There are 8 chains in PDB entry 6CNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10SER 386
B
 GLY 10SER 386
C
 GLY 10SER 386
D
 GLY 10SER 386
E
 SER 81THR 146
F
 SER 81THR 146
G
 SER 81THR 146
H
 SER 81THR 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 6CNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 49Right-handed alpha
Helix 2
2
A
55 91Right-handed alpha
Helix 3
3
A
102 115Right-handed alpha
Helix 4
4
A
147 155Right-handed alpha
Helix 5
5
A
156 162Right-handed 310
Helix 6
6
A
163 170Right-handed alpha
Helix 7
7
A
177 186Right-handed alpha
Helix 8
8
A
192 202Right-handed alpha
Helix 9
9
A
205 227Right-handed alpha
Helix 10
10
A
237 249Right-handed alpha
Helix 11
11
A
261 289Right-handed alpha
Helix 12
12
A
293 331Right-handed alpha
Helix 13
13
A
334 367Right-handed alpha
Helix 14
14
A
370 386Right-handed alpha
Helix 15
15
B
10 49Right-handed alpha
Helix 16
16
B
55 91Right-handed alpha
Helix 17
17
B
102 115Right-handed alpha
Helix 18
18
B
147 155Right-handed alpha
Helix 19
19
B
156 162Right-handed 310
Helix 20
20
B
163 170Right-handed alpha
Helix 21
21
B
177 186Right-handed alpha
Helix 22
22
B
192 202Right-handed alpha
Helix 23
23
B
205 227Right-handed alpha
Helix 24
24
B
237 249Right-handed alpha
Helix 25
25
B
261 289Right-handed alpha
Helix 26
26
B
293 331Right-handed alpha
Helix 27
27
B
334 367Right-handed alpha
Helix 28
28
B
370 386Right-handed alpha
Helix 29
29
C
10 49Right-handed alpha
Helix 30
30
C
55 91Right-handed alpha
Helix 31
31
C
102 115Right-handed alpha
Helix 32
32
C
147 155Right-handed alpha
Helix 33
33
C
156 162Right-handed 310
Helix 34
34
C
163 170Right-handed alpha
Helix 35
35
C
177 186Right-handed alpha
Helix 36
36
C
192 202Right-handed alpha
Helix 37
37
C
205 227Right-handed alpha
Helix 38
38
C
237 249Right-handed alpha
Helix 39
39
C
261 289Right-handed alpha
Helix 40
40
C
293 331Right-handed alpha
Helix 41
41
C
334 367Right-handed alpha
Helix 42
42
C
370 386Right-handed alpha
Helix 43
43
D
10 49Right-handed alpha
Helix 44
44
D
55 91Right-handed alpha
Helix 45
45
D
102 115Right-handed alpha
Helix 46
46
D
147 155Right-handed alpha
Helix 47
47
D
156 162Right-handed 310
Helix 48
48
D
163 170Right-handed alpha
Helix 49
49
D
177 186Right-handed alpha
Helix 50
50
D
192 202Right-handed alpha
Helix 51
51
D
205 227Right-handed alpha
Helix 52
52
D
237 249Right-handed alpha
Helix 53
53
D
261 289Right-handed alpha
Helix 54
54
D
293 331Right-handed alpha
Helix 55
55
D
334 367Right-handed alpha
Helix 56
56
D
370 386Right-handed alpha
Helix 57
57
E
81 92Right-handed alpha
Helix 58
58
E
102 110Right-handed alpha
Helix 59
59
E
117 129Right-handed alpha
Helix 60
60
E
138 146Right-handed alpha
Helix 61
61
F
81 92Right-handed alpha
Helix 62
62
F
102 110Right-handed alpha
Helix 63
63
F
117 129Right-handed alpha
Helix 64
64
F
138 146Right-handed alpha
Helix 65
65
G
81 92Right-handed alpha
Helix 66
66
G
102 110Right-handed alpha
Helix 67
67
G
117 129Right-handed alpha
Helix 68
68
G
138 146Right-handed alpha
Helix 69
69
H
81 92Right-handed alpha
Helix 70
70
H
102 110Right-handed alpha
Helix 71
71
H
117 129Right-handed alpha
Helix 72
72
H
138 146Right-handed alpha
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There are 4 sheets in PDB entry 6CNM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 101first strand
Strand 2
E
135 137anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 101first strand
Strand 2
F
135 137anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
99 101first strand
Strand 2
G
135 137anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
99 101first strand
Strand 2
H
135 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il