Analysis of interatomic Contacts of Structural Units in PDB entry:
6CO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CO1 entry

There are 4 chains in PDB entry 6CO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	LEU 206
B	VAL 6	LYS 205
C	VAL 6	LEU 207
D	VAL 6	ARG 14

There are 35 helices in PDB entry 6CO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	41	43	Right-handed 310
Helix 3	AA3	A	73	86	Right-handed alpha
Helix 4	AA4	A	92	94	Right-handed 310
Helix 5	AA5	A	118	131	Right-handed alpha
Helix 6	AA6	A	156	162	Right-handed alpha
Helix 7	AA7	A	166	180	Right-handed alpha
Helix 8	AA8	A	184	206	Right-handed alpha
Helix 9	AA9	B	13	19	Right-handed alpha
Helix 10	AB1	B	73	87	Right-handed alpha
Helix 11	AB2	B	92	94	Right-handed 310
Helix 12	AB3	B	118	131	Right-handed alpha
Helix 13	AB4	B	156	162	Right-handed alpha
Helix 14	AB5	B	166	180	Right-handed alpha
Helix 15	AB6	B	184	205	Right-handed alpha
Helix 16	AB7	C	13	19	Right-handed alpha
Helix 17	AB8	C	41	43	Right-handed 310
Helix 18	AB9	C	73	86	Right-handed alpha
Helix 19	AC1	C	92	94	Right-handed 310
Helix 20	AC2	C	118	131	Right-handed alpha
Helix 21	AC3	C	156	162	Right-handed alpha
Helix 22	AC4	C	166	180	Right-handed alpha
Helix 23	AC5	C	184	206	Right-handed alpha
Helix 24	AC6	D	13	18	Right-handed alpha
Helix 25	AC7	D	41	43	Right-handed 310
Helix 26	AC8	D	73	86	Right-handed alpha
Helix 27	AC9	D	92	94	Right-handed 310
Helix 28	AD1	D	118	130	Right-handed alpha
Helix 29	AD2	D	156	162	Right-handed alpha
Helix 30	AD3	D	166	180	Right-handed alpha
Helix 31	AD4	D	184	206	Right-handed alpha
Helix 32	AD5	E	1589	1595	Right-handed alpha
Helix 33	AD6	E	1596	1601	Right-handed alpha
Helix 34	AD7	F	1589	1595	Right-handed alpha
Helix 35	AD8	F	1596	1601	Right-handed alpha

There are 12 sheets in PDB entry 6CO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	108	117	anti-parallel
Strand 4	A	25	40	parallel
Strand 5	A	44	55	anti-parallel
Strand 6	A	64	67	first strand

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	44	55	anti-parallel
Strand 3	A	25	40	anti-parallel
Strand 4	A	139	146	first strand

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	108	117	anti-parallel
Strand 4	B	25	40	parallel
Strand 5	B	44	55	anti-parallel
Strand 6	B	64	67	first strand

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	44	55	anti-parallel
Strand 3	B	25	40	anti-parallel
Strand 4	B	139	145	first strand

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	108	117	anti-parallel
Strand 4	C	25	40	parallel
Strand 5	C	44	55	anti-parallel
Strand 6	C	64	67	first strand

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	44	55	anti-parallel
Strand 3	C	25	40	anti-parallel
Strand 4	C	139	145	first strand

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	108	117	anti-parallel
Strand 4	D	25	40	parallel
Strand 5	D	44	55	anti-parallel
Strand 6	D	64	67	first strand

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	44	55	anti-parallel
Strand 3	D	25	40	anti-parallel
Strand 4	D	139	145	first strand

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1524	1528	first strand
Strand 2	E	1514	1519	anti-parallel
Strand 3	E	1502	1511	anti-parallel
Strand 4	E	1490	1493	anti-parallel
Strand 5	E	1532	1533	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1577	1582	first strand
Strand 2	E	1567	1574	anti-parallel
Strand 3	E	1552	1564	anti-parallel
Strand 4	E	1543	1548	anti-parallel
Strand 5	E	1586	1587	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1524	1528	first strand
Strand 2	F	1514	1519	anti-parallel
Strand 3	F	1502	1511	anti-parallel
Strand 4	F	1490	1493	anti-parallel
Strand 5	F	1532	1533	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1577	1582	first strand
Strand 2	F	1567	1574	anti-parallel
Strand 3	F	1552	1564	anti-parallel
Strand 4	F	1543	1548	anti-parallel
Strand 5	F	1586	1587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CO1