Analysis of interatomic Contacts of Structural Units in PDB entry:
6CO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CO6 entry

There are 2 chains in PDB entry 6CO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 294
B
 THR 6VAL 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6CO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
86 95Right-handed alpha
Helix 5
AA5
A
104 117Right-handed alpha
Helix 6
AA6
A
131 137Right-handed alpha
Helix 7
AA7
A
138 140Right-handed 310
Helix 8
AA8
A
190 197Right-handed alpha
Helix 9
AA9
A
210 218Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
252 263Right-handed alpha
Helix 13
AB4
A
265 277Right-handed alpha
Helix 14
AB5
A
280 293Right-handed alpha
Helix 15
AB6
B
9 21Right-handed alpha
Helix 16
AB7
B
34 47Right-handed alpha
Helix 17
AB8
B
79 90Right-handed alpha
Helix 18
AB9
B
127 135Right-handed alpha
Helix 19
AC1
B
160 164Right-handed 310
Helix 20
AC2
B
168 172Right-handed 310
Helix 21
AC3
B
205 212Right-handed alpha
Helix 22
AC4
B
219 223Right-handed 310
Helix 23
AC5
B
230 240Right-handed alpha
Helix 24
AC6
B
245 251Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6CO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
69 77parallel
Strand 3
A
50 56parallel
Strand 4
A
23 26parallel
Strand 5
A
165 175parallel
Strand 6
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
69 77parallel
Strand 3
A
50 56parallel
Strand 4
A
23 26parallel
Strand 5
A
165 175parallel
Strand 6
A
198 208parallel
Strand 7
A
232 235parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
141 144anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
92 96parallel
Strand 3
B
137 141parallel
Strand 4
B
176 181parallel
Strand 5
B
184 190anti-parallel
Strand 6
B
194 200anti-parallel
Strand 7
B
224 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
74 77anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
107 108anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
120 121anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il