Analysis of interatomic Contacts of Structural Units in PDB entry:
6COD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6COD entry

There are 2 chains in PDB entry 6COD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 259
B
 MET 1GLY 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6COD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed 310
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
54 68Right-handed alpha
Helix 5
AA5
A
82 94Right-handed alpha
Helix 6
AA6
A
116 126Right-handed alpha
Helix 7
AA7
A
150 158Right-handed alpha
Helix 8
AA8
A
163 174Right-handed alpha
Helix 9
AA9
A
180 187Right-handed alpha
Helix 10
AB1
A
194 198Right-handed 310
Helix 11
AB2
A
212 223Right-handed alpha
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
242 257Right-handed alpha
Helix 14
AB5
B
16 21Right-handed 310
Helix 15
AB6
B
22 30Right-handed alpha
Helix 16
AB7
B
48 52Right-handed 310
Helix 17
AB8
B
54 68Right-handed alpha
Helix 18
AB9
B
82 94Right-handed alpha
Helix 19
AC1
B
116 124Right-handed alpha
Helix 20
AC2
B
150 158Right-handed alpha
Helix 21
AC3
B
163 174Right-handed alpha
Helix 22
AC4
B
180 186Right-handed alpha
Helix 23
AC5
B
194 198Right-handed 310
Helix 24
AC6
B
212 223Right-handed alpha
Helix 25
AC7
B
237 242Right-handed alpha
Helix 26
AC8
B
242 257Right-handed alpha
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There are 4 sheets in PDB entry 6COD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
6 10parallel
Strand 3
A
75 80parallel
Strand 4
A
98 104parallel
Strand 5
A
200 205parallel
Strand 6
A
228 231parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 139first strand
Strand 2
A
142 148anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
6 10parallel
Strand 3
B
75 80parallel
Strand 4
B
98 104parallel
Strand 5
B
200 205parallel
Strand 6
B
228 231parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 139first strand
Strand 2
B
142 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il