Analysis of interatomic Contacts of Structural Units in PDB entry:
6COX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6COX entry

There are 2 chains in PDB entry 6COX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33GLN 583
B
 ALA 33GLN 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6COX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
74 80Right-handed alpha
Helix 4
4
A
87 94Right-handed alpha
Helix 5
5
A
97 105Right-handed alpha
Helix 6
6
A
106 123Right-handed alpha
Helix 7
7
A
139 143Right-handed alpha
Helix 8
8
A
174 181Right-handed alpha
Helix 9
9
A
196 205Right-handed alpha
Helix 10
10
A
231 234Right-handed alpha
Helix 11
11
A
238 243Right-handed alpha
Helix 12
12
A
281 283Right-handed 310
Helix 13
13
A
292 294Right-handed 310
Helix 14
14
A
296 319Right-handed alpha
Helix 15
15
A
325 346Right-handed alpha
Helix 16
16
A
348 353Right-handed alpha
Helix 17
17
A
363 365Right-handed 310
Helix 18
18
A
379 385Right-handed alpha
Helix 19
19
A
388 390Right-handed 310
Helix 20
20
A
404 407Right-handed alpha
Helix 21
21
A
411 417Right-handed alpha
Helix 22
22
A
420 427Right-handed alpha
Helix 23
23
A
443 454Right-handed 310
Helix 24
24
A
463 469Right-handed alpha
Helix 25
25
A
478 482Right-handed alpha
Helix 26
26
A
486 494Right-handed alpha
Helix 27
27
A
498 500Right-handed 310
Helix 28
28
A
503 509Right-handed alpha
Helix 29
29
A
520 535Right-handed alpha
Helix 30
30
A
538 540Right-handed 310
Helix 31
31
A
554 560Right-handed alpha
Helix 32
32
A
564 571Right-handed alpha
Helix 33
33
B
35 38Right-handed 310
Helix 34
34
B
74 80Right-handed alpha
Helix 35
35
B
87 94Right-handed alpha
Helix 36
36
B
97 105Right-handed alpha
Helix 37
37
B
106 123Right-handed alpha
Helix 38
38
B
139 143Right-handed alpha
Helix 39
39
B
174 181Right-handed alpha
Helix 40
40
B
196 205Right-handed alpha
Helix 41
41
B
231 234Right-handed alpha
Helix 42
42
B
238 243Right-handed alpha
Helix 43
43
B
281 283Right-handed 310
Helix 44
44
B
292 294Right-handed 310
Helix 45
45
B
296 319Right-handed alpha
Helix 46
46
B
325 346Right-handed alpha
Helix 47
47
B
348 353Right-handed alpha
Helix 48
48
B
363 365Right-handed 310
Helix 49
49
B
379 385Right-handed alpha
Helix 50
50
B
388 390Right-handed 310
Helix 51
51
B
404 407Right-handed alpha
Helix 52
52
B
411 417Right-handed alpha
Helix 53
53
B
420 427Right-handed alpha
Helix 54
54
B
443 454Right-handed 310
Helix 55
55
B
463 470Right-handed alpha
Helix 56
56
B
478 482Right-handed alpha
Helix 57
57
B
486 494Right-handed alpha
Helix 58
58
B
498 500Right-handed 310
Helix 59
59
B
503 509Right-handed alpha
Helix 60
60
B
520 535Right-handed alpha
Helix 61
61
B
538 540Right-handed 310
Helix 62
62
B
547 550Right-handed 310
Helix 63
63
B
554 560Right-handed alpha
Helix 64
64
B
564 571Right-handed alpha
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There are 4 sheets in PDB entry 6COX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
55 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
55 58anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
260 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il