Analysis of interatomic Contacts of Structural Units in PDB entry:
6CP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CP2 entry

There are 3 chains in PDB entry 6CP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8VAL 509
B
 MET 1VAL 153
C
 GLY -1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6CP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
68 89Right-handed alpha
Helix 3
AA3
A
100 125Right-handed alpha
Helix 4
AA4
A
144 153Right-handed alpha
Helix 5
AA5
A
185 189Right-handed 310
Helix 6
AA6
A
201 211Right-handed alpha
Helix 7
AA7
A
224 235Right-handed alpha
Helix 8
AA8
A
247 269Right-handed alpha
Helix 9
AA9
A
271 277Right-handed 310
Helix 10
AB1
A
289 295Right-handed alpha
Helix 11
AB2
A
305 318Right-handed alpha
Helix 12
AB3
A
320 326Right-handed alpha
Helix 13
AB4
A
340 365Right-handed alpha
Helix 14
AB5
A
371 378Right-handed alpha
Helix 15
AB6
A
380 396Right-handed alpha
Helix 16
AB7
A
399 409Right-handed alpha
Helix 17
AB8
A
421 439Right-handed alpha
Helix 18
AB9
A
470 478Right-handed alpha
Helix 19
AC1
A
489 497Right-handed alpha
Helix 20
AC2
B
2 17Right-handed alpha
Helix 21
AC3
B
87 91Right-handed 310
Helix 22
AC4
B
100 114Right-handed alpha
Helix 23
AC5
B
122 131Right-handed alpha
Helix 24
AC6
B
132 148Right-handed alpha
Helix 25
AC7
C
22 35Right-handed alpha
Helix 26
AC8
C
37 39Right-handed 310
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There are 7 sheets in PDB entry 6CP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
465 469anti-parallel
Strand 4
A
460 462anti-parallel
Strand 5
A
501 502parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
C
74 76parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 66anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
447 451anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
337 338anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
67 70anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
1 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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