Analysis of interatomic Contacts of Structural Units in PDB entry:
6CP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CP8 entry

There are 4 chains in PDB entry 6CP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 175LYS 336
B
 ASN 175LYS 336
C
 VAL 4ASN 161
D
 ASN 5ASN 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6CP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
203 210Right-handed alpha
Helix 2
AA2
A
216 234Right-handed alpha
Helix 3
AA3
A
234 241Right-handed alpha
Helix 4
AA4
A
241 271Right-handed alpha
Helix 5
AA5
A
276 291Right-handed alpha
Helix 6
AA6
B
203 210Right-handed alpha
Helix 7
AA7
B
216 234Right-handed alpha
Helix 8
AA8
B
234 241Right-handed alpha
Helix 9
AA9
B
241 271Right-handed alpha
Helix 10
AB1
B
276 291Right-handed alpha
Helix 11
AB2
B
292 294Right-handed 310
Helix 12
AB3
C
6 21Right-handed alpha
Helix 13
AB4
C
30 46Right-handed alpha
Helix 14
AB5
C
46 60Right-handed alpha
Helix 15
AB6
C
66 78Right-handed alpha
Helix 16
AB7
C
81 93Right-handed alpha
Helix 17
AB8
C
94 96Right-handed 310
Helix 18
AB9
C
97 112Right-handed alpha
Helix 19
AC1
C
123 136Right-handed alpha
Helix 20
AC2
C
140 144Right-handed 310
Helix 21
AC3
C
145 157Right-handed alpha
Helix 22
AC4
D
6 21Right-handed alpha
Helix 23
AC5
D
30 46Right-handed alpha
Helix 24
AC6
D
46 60Right-handed alpha
Helix 25
AC7
D
66 78Right-handed alpha
Helix 26
AC8
D
81 93Right-handed alpha
Helix 27
AC9
D
94 96Right-handed 310
Helix 28
AD1
D
97 112Right-handed alpha
Helix 29
AD2
D
123 136Right-handed alpha
Helix 30
AD3
D
138 144Right-handed 310
Helix 31
AD4
D
145 157Right-handed alpha
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There are 2 sheets in PDB entry 6CP8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
326 332parallel
Strand 5
A
310 320anti-parallel
Strand 6
A
300 307anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 183first strand
Strand 2
B
189 195anti-parallel
Strand 3
B
198 201anti-parallel
Strand 4
B
326 332parallel
Strand 5
B
310 320anti-parallel
Strand 6
B
300 307anti-parallel
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