Analysis of interatomic Contacts of Structural Units in PDB entry:
6CP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CP9 entry

There are 8 chains in PDB entry 6CP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 144	GLY 261
B	MSE 1	ILE 115
C	ALA 145	GLY 261
D	MSE 1	ARG 116
E	THR 143	GLY 261
F	MSE 1	ARG 116
G	SER 151	LYS 259
H	MSE 1	VAL 114

There are 22 helices in PDB entry 6CP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	150	Right-handed alpha
Helix 2	AA2	A	154	162	Right-handed alpha
Helix 3	AA3	A	174	186	Right-handed alpha
Helix 4	AA4	A	190	205	Right-handed alpha
Helix 5	AA5	A	206	209	Right-handed 310
Helix 6	AA6	B	8	17	Right-handed alpha
Helix 7	AA7	C	156	162	Right-handed alpha
Helix 8	AA8	C	174	186	Right-handed alpha
Helix 9	AA9	C	190	207	Right-handed alpha
Helix 10	AB1	D	8	17	Right-handed alpha
Helix 11	AB2	D	25	27	Right-handed 310
Helix 12	AB3	E	144	150	Right-handed alpha
Helix 13	AB4	E	156	162	Right-handed alpha
Helix 14	AB5	E	174	186	Right-handed alpha
Helix 15	AB6	E	190	207	Right-handed alpha
Helix 16	AB7	F	8	17	Right-handed alpha
Helix 17	AB8	F	25	27	Right-handed 310
Helix 18	AB9	G	156	162	Right-handed alpha
Helix 19	AC1	G	174	186	Right-handed alpha
Helix 20	AC2	G	190	207	Right-handed alpha
Helix 21	AC3	H	8	17	Right-handed alpha
Helix 22	AC4	H	25	27	Right-handed 310

There are 8 sheets in PDB entry 6CP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	221	230	anti-parallel
Strand 3	A	236	245	anti-parallel
Strand 4	A	251	259	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	29	35	anti-parallel
Strand 3	B	40	47	anti-parallel
Strand 4	B	52	59	anti-parallel
Strand 5	B	62	70	anti-parallel
Strand 6	D	108	115	parallel
Strand 7	D	95	102	anti-parallel
Strand 8	D	83	91	anti-parallel
Strand 9	D	76	80	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	83	91	anti-parallel
Strand 3	B	96	102	anti-parallel
Strand 4	B	108	114	anti-parallel
Strand 5	D	62	70	parallel
Strand 6	D	52	59	anti-parallel
Strand 7	D	40	47	anti-parallel
Strand 8	D	29	35	anti-parallel
Strand 9	D	22	24	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	216	first strand
Strand 2	C	221	230	anti-parallel
Strand 3	C	236	245	anti-parallel
Strand 4	C	251	259	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	216	first strand
Strand 2	E	221	230	anti-parallel
Strand 3	E	236	245	anti-parallel
Strand 4	E	251	259	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	29	35	anti-parallel
Strand 3	F	40	47	anti-parallel
Strand 4	F	52	59	anti-parallel
Strand 5	F	62	70	anti-parallel
Strand 6	H	108	114	parallel
Strand 7	H	96	102	anti-parallel
Strand 8	H	83	91	anti-parallel
Strand 9	H	75	80	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	80	first strand
Strand 2	F	83	91	anti-parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	108	115	anti-parallel
Strand 5	H	62	69	parallel
Strand 6	H	52	59	anti-parallel
Strand 7	H	40	47	anti-parallel
Strand 8	H	29	35	anti-parallel
Strand 9	H	22	24	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	217	first strand
Strand 2	G	220	230	anti-parallel
Strand 3	G	236	245	anti-parallel
Strand 4	G	251	258	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CP9