Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CPG entry

There are 4 chains in PDB entry 6CPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 127	SER 387
B	SER 5	THR 93
D	GLN 127	SER 388
E	VAL 6	THR 93

There are 27 helices in PDB entry 6CPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	133	Right-handed 310
Helix 2	AA2	A	166	173	Right-handed alpha
Helix 3	AA3	A	174	187	Right-handed alpha
Helix 4	AA4	A	217	226	Right-handed alpha
Helix 5	AA5	A	229	250	Right-handed alpha
Helix 6	AA6	A	258	260	Right-handed 310
Helix 7	AA7	A	291	296	Right-handed 310
Helix 8	AA8	A	297	302	Right-handed alpha
Helix 9	AA9	A	309	325	Right-handed alpha
Helix 10	AB1	A	333	344	Right-handed alpha
Helix 11	AB2	A	353	364	Right-handed alpha
Helix 12	AB3	A	367	371	Right-handed 310
Helix 13	AB4	A	373	379	Right-handed alpha
Helix 14	AB5	A	380	387	Right-handed alpha
Helix 15	AB6	D	129	133	Right-handed 310
Helix 16	AB7	D	166	173	Right-handed alpha
Helix 17	AB8	D	174	185	Right-handed alpha
Helix 18	AB9	D	218	226	Right-handed alpha
Helix 19	AC1	D	229	250	Right-handed alpha
Helix 20	AC2	D	258	260	Right-handed 310
Helix 21	AC3	D	291	296	Right-handed 310
Helix 22	AC4	D	297	302	Right-handed alpha
Helix 23	AC5	D	309	325	Right-handed alpha
Helix 24	AC6	D	333	344	Right-handed alpha
Helix 25	AC7	D	353	364	Right-handed alpha
Helix 26	AC8	D	373	379	Right-handed alpha
Helix 27	AC9	D	380	387	Right-handed alpha

There are 10 sheets in PDB entry 6CPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	145	151	anti-parallel
Strand 3	A	158	165	anti-parallel
Strand 4	A	205	210	anti-parallel
Strand 5	A	196	201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	270	272	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	58	62	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	33	40	anti-parallel
Strand 3	B	69	78	anti-parallel
Strand 4	B	82	83	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	33	40	anti-parallel
Strand 3	B	69	78	anti-parallel
Strand 4	B	87	92	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	141	first strand
Strand 2	D	145	151	anti-parallel
Strand 3	D	158	165	anti-parallel
Strand 4	D	205	210	anti-parallel
Strand 5	D	196	201	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	262	264	anti-parallel
Strand 3	D	270	272	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	15	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	58	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	33	37	anti-parallel
Strand 3	E	69	78	anti-parallel
Strand 4	E	82	83	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	33	37	anti-parallel
Strand 3	E	69	78	anti-parallel
Strand 4	E	87	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CPG